~ruther/guix-local

ref: db0164b21f82d3cb344e496874eeede9317e95ad guix-local/gnu/packages/bioinformatics.scm -rw-r--r-- 401.4 KiB
e160aa1f — Ricardo Wurmus 8 years ago 
gnu: Add r-gage.

* gnu/packages/bioinformatics.scm (r-gage): New variable.
3121814e — Ricardo Wurmus 8 years ago 
gnu: Add r-keggrest.

* gnu/packages/bioinformatics.scm (r-keggrest): New variable.
baa00ee9 — Ricardo Wurmus 8 years ago 
gnu: r-msnbase: Update to 2.4.0.

* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.4.0.
[propagated-inputs]: Add r-lattice; remove r-reshape2.
39d9098d — Ricardo Wurmus 8 years ago 
gnu: r-mutationalpatterns: Update to 1.4.0.

* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.0.
[propagated-inputs]: Add r-cowplot, r-ggdendro, and r-s4vectors.
14b3c719 — Ricardo Wurmus 8 years ago 
gnu: r-annotationhub: Update to 2.10.0.

* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.0.
[propagated-inputs]: Add r-curl.
15ca1959 — Ricardo Wurmus 8 years ago 
gnu: r-mzr: Remove bundled copy of boost.

* gnu/packages/bioinformatics.scm (r-mzr)[source]: Remove boost source.
[arguments]: Add build phase "use-system-boost" to link with our boost
package and avoid building the bundled sources.
34b96754 — Ricardo Wurmus 8 years ago 
gnu: r-mzr: Update to 2.12.0.

* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.12.0.
b500dbcd — Ricardo Wurmus 8 years ago 
gnu: r-mzid: Update to 1.16.0.

* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.16.0.
eeaa6967 — Ricardo Wurmus 8 years ago 
gnu: r-chipseq: Update to 1.28.0.

* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.28.0.
[propagated-inputs]: Add r-lattice.
158b6743 — Ricardo Wurmus 8 years ago 
gnu: r-genomicfeatures: Update to 1.30.0.

* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.30.0.
[propagated-inputs]: Add r-rmysql.
4dd469ef — Ricardo Wurmus 8 years ago 
gnu: r-rtracklayer: Update to 1.38.0.

* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.0.
[arguments]: Adjust patch to use system zlib.
a044c7f4 — Ricardo Wurmus 8 years ago 
gnu: r-biocparallel: Update to 1.12.0.

* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.12.0.
[propagated-inputs]: Add r-bh.
42e11d33 — Ricardo Wurmus 8 years ago 
gnu: r-biomart: Update to 2.34.0.

* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.0.
[propagated-inputs]: Add r-progress and r-stringr.
010ab2ff — Ricardo Wurmus 8 years ago 
gnu: r-edger: Update to 3.20.1.

* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.1.
[propagated-inputs]: Add r-rcpp.
eb3f5cc7 — Ricardo Wurmus 8 years ago 
gnu: r-gostats: Update to 2.44.0.

* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.44.0.
[propagated-inputs]: Add r-rgraphviz.
2404cc42 — Ricardo Wurmus 8 years ago 
gnu: r-category: Update to 2.44.0.

* gnu/packages/bioinformatics.scm (r-category): Update to 2.44.0.
[propagated-inputs]: Remove r-rsqlite; add r-dbi.
1be0f536 — Ricardo Wurmus 8 years ago 
gnu: r-vsn: Update to 3.46.0.

* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.46.0.
[propagated-inputs]: Remove r-hexbin.
007424b5 — Ricardo Wurmus 8 years ago 
gnu: r-motifrg: Rename input label.

* gnu/packages/bioinformatics.scm (r-motifrg)[propagated-inputs]:
Rename label of r-bsgenome-hsapiens-ucsc-hg19.
ce59d625 — Ricardo Wurmus 8 years ago 
gnu: r-motifrg: Update to 1.22.0.

* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.22.0.
98791c25 — Ricardo Wurmus 8 years ago 
gnu: r-qvalue: Update to 2.10.0.

* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.10.0.
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