~ruther/guix-local

ref: bf7764b74f6052bbb977b869efdcfbb8b6e9e588 guix-local/gnu/packages d---------
bf7764b7 — Ricardo Wurmus 10 years ago 
gnu: Add GenomeInfoDb.

* gnu/packages/bioinformatics.scm (r-genomeinfodb): New variable.
78addcb0 — Ricardo Wurmus 10 years ago 
gnu: Add IRanges.

* gnu/packages/bioinformatics.scm (r-iranges): New variable.
7485129e — Ricardo Wurmus 10 years ago 
gnu: Add S4Vectors.

* gnu/packages/bioinformatics.scm (r-s4vectors): New variable.
d29b25c4 — Ricardo Wurmus 10 years ago 
gnu: Add BiocGenerics.

* gnu/packages/bioinformatics.scm (r-biocgenerics): New variable.
9fba89e8 — Ricardo Wurmus 10 years ago 
gnu: Add r-acsnminer.

* gnu/packages/bioinformatics.scm (r-acsnminer): New variable.
9e47f30b — Ricardo Wurmus 10 years ago 
gnu: Add r-gridextra.

* gnu/packages/statistics.scm (r-gridextra): New variable.
b73751c8 — Ricardo Wurmus 10 years ago 
gnu: Add r-gtable.

* gnu/packages/statistics.scm (r-gtable): New variable.
77bdb276 — Ricardo Wurmus 10 years ago 
gnu: Add r-rmarkdown.

* gnu/packages/statistics.scm (r-rmarkdown): New variable.
* gnu/packages/haskell.scm: Do not select libxml2 from the xml module to
  prevent circular package module imports.
4c1f2705 — Ricardo Wurmus 10 years ago 
gnu: Add r-catools.

* gnu/packages/statistics.scm (r-catools): New variable.
bb6d2dad — Ricardo Wurmus 10 years ago 
gnu: Add r-bitops.

* gnu/packages/statistics.scm (r-bitops): New variable.
8406138b — Ricardo Wurmus 10 years ago 
gnu: Add AdaptiveSparsity.

* gnu/packages/machine-learning.scm (r-adaptivesparsity): New variable.
e22d4ca4 — Ricardo Wurmus 10 years ago 
gnu: Add r-rcpparmadillo.

* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): New variable.
* gnu/packages/statistics.scm (r-rcpparmadillo): New variable.
b15e47f9 — Ricardo Wurmus 10 years ago 
gnu: Add armadillo.

* gnu/packages/maths.scm (armadillo): New variable.
086e498b — Ricardo Wurmus 10 years ago 
gnu: Add libgit2.

* gnu/packages/version-control.scm (libgit2): New variable.
02f35bb5 — Ben Woodcroft 10 years ago 
gnu: mafft: Update to 7.267.

* gnu/packages/bioinformatics.scm (mafft): Update to 7.267.
[arguments]: Don't include mafft-homologs manpage.
[inputs]: Add gawk and grep.
[propagated-inputs]: Add coreutils.
1ef3f91a — Mathieu Lirzin 10 years ago 
gnu: rxvt-unicode: Install the terminal capability data.

This provides the necessary terminal capability data, which are required
by ncurses-based applications.

* gnu/packages/xdisorg.scm (rxvt-unicode)[native-inputs]: Add ncurses.
[arguments]: Set the destination of the terminfo files.
[native-search-path]: New field.  Make them automatically available to
the user.
72d8b5ba — Efraim Flashner 10 years ago 
gnu: msmtp: Update to 1.6.3.

* gnu/packages/mail.scm (msmtp): Update to 1.6.3.
[inputs]: Add libsecret.
ec92806a — Efraim Flashner 10 years ago 
gnu: claws-mail: Update to 3.13.1.

* gnu/packages/mail.scm (claws-mail): Update to 3.13.1.
56918e26 — Efraim Flashner 10 years ago 
gnu: python-cython: Update to 0.23.4.

* gnu/packages/python.scm (python-cython): Update to 0.23.4.
e99711af — David Thompson 10 years ago 
gnu: ruby: Update to 2.2.4.

This version fixes CVE-2015-7551.

* gnu/packages/ruby.scm (ruby): Update to 2.2.4.
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