~ruther/guix-local

ref: ad34f0ac96f6f3f074d438b6c19d8211eefc3fa3 guix-local/gnu d---------
ad34f0ac — Ricardo Wurmus 9 years ago 
gnu: Add r-deseq2.

* gnu/packages/bioinformatics.scm (r-deseq2): New variable.
2301fd3e — Ricardo Wurmus 9 years ago 
gnu: Add r-genefilter.

* gnu/packages/bioinformatics.scm (r-genefilter): New variable.
2d21d44d — Ricardo Wurmus 9 years ago 
gnu: Add r-hmisc.

* gnu/packages/statistics.scm (r-hmisc): New variable.
07a664cd — Ricardo Wurmus 9 years ago 
gnu: Add r-geneplotter.

* gnu/packages/bioinformatics.scm (r-geneplotter): New variable.
8c6de588 — Ricardo Wurmus 9 years ago 
gnu: Add r-annotate.

* gnu/packages/bioinformatics.scm (r-annotate): New variable.
2213730c — Ricardo Wurmus 9 years ago 
gnu: Add r-rpart.

* gnu/packages/statistics.scm (r-rpart): New variable.
356c6d61 — Ricardo Wurmus 9 years ago 
gnu: Add r-rjson.

* gnu/packages/web.scm (r-rjson): New variable.
bbed0ab6 — Ricardo Wurmus 9 years ago 
gnu: Add r-hwriter.

* gnu/packages/web.scm (r-hwriter): New variable.
57a31efb — Ricardo Wurmus 9 years ago 
gnu: tcc: Disable build on MIPS.

* gnu/packages/c.scm (tcc)[supported-systems]: Disable build on
mips64el.
93117227 — Arun Isaac 9 years ago 
gnu: Add optipng.

* gnu/packages/image.scm (optipng): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
5babe521 — Ludovic Courtès 9 years ago 
system: Don't emit a GRUB 'search' command when passed a GRUB file name.

Reported by Tomáš Čech <tcech@suse.com>
at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=20067#26>.

* gnu/system/grub.scm (grub-root-search): Don't emit anything when FILE
is a string that does not denote an absolute file name.
7acd71d1 — Ricardo Wurmus 9 years ago 
gnu: epiphany: Drop NSS and libwnck.

These dependencies were dropped in Epiphany 3.21.x.

* gnu/packages/gnome.scm (epiphany)[inputs]: Remove "nss" and "libwnck".
9f58932e — Ricardo Wurmus 9 years ago 
gnu: epiphany: Update to 3.22.0.

* gnu/packages/gnome.scm (epiphany): Update to 3.22.0.
58d04dba — Ricardo Wurmus 9 years ago 
gnu: python-virtualenv: Update to 15.0.3.

* gnu/packages/python.scm (python-virtualenv): Update to 15.0.3.
[arguments]: Disable failing test.
1535c0a6 — Mark H Weaver 9 years ago 
gnu: linux-libre: Update to 4.7.5.

* gnu/packages/linux.scm (linux-libre): Update to 4.7.5.
dfcce0cc — Mark H Weaver 9 years ago 
gnu: linux-libre@4.4: Update to 4.4.22.

* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.22.
94c5dc8c — John Darrington 9 years ago 
gnu: Add pam-krb5

* gnu/packages/admin.scm (pam-krb5): New variable.
a8f3d492 — Efraim Flashner 9 years ago 
gnu: privoxy: Update to 3.0.26.

* gnu/packages/tor.scm (privoxy): Update to 3.0.26.
[home-page]: Use https.
0ab57b0d — Efraim Flashner 9 years ago 
gnu: tor: Update to 0.2.8.8.

* gnu/packages/tor.scm (tor): Update to 0.2.8.8.
[source]: Update source url.
[home-page]: Use https.
0f65f54e — Carlos Sánchez de La Lama 9 years ago 
system: grub.cfg uses correct file names when store is not in root partition.

Fixes <http://bugs.gnu.org/24346>.
Reported by csanchezdll@gmail.com (Carlos Sánchez de La Lama).

* guix/scripts/system.scm (previous-grub-entries): Get the initrd file
name from PARAMS.
* gnu/system.scm (operating-system-grub.cfg): Use
'operating-system-initrd-file' to retrieve the initrd file name.
* gnu/system/grub.scm (strip-mount-point): New procedure.
(grub-configuration-file)[entry->gexp]: Call 'strip-mount-point' for
LINUX and INITRD.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
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