gnu: Add python-tasklogger.

* gnu/packages/python-xyz.scm (python-tasklogger): New variable.

Change-Id: I53319b70b7788090e8873a912d7c56044c0bb5b2

gnu: python-nose2: Update to 0.14.0.

* gnu/packages/check.scm (python-nose2): Update to 0.14.0.
[native-inputs]: Remove python-coverage.
[propagated-inputs]: Remove python-six.

Change-Id: I15a30723fe49cca9929524e543d12c9e2f4b02ca

gnu: python-scikit-learn: Disable one test.

This test fails with the upgrade of scipy.

* gnu/packages/machine-learning.scm (python-scikit-learn)[arguments]: Disable
test_singular_matrix test.

Change-Id: I47627403826bb5c52f4d578399c7cabaa3f8838d

gnu: Add python-pygsp.

* gnu/packages/graph.scm (python-pygsp): New variable.

Change-Id: I8dd195216617e5cdb4a7453ecbe23cd9ff9e06a3

gnu: Add r-scenic.

* gnu/packages/bioinformatics.scm (r-scenic): New variable.

Change-Id: Iff1f501a406ba1a12e49093a575e03facc98f303

gnu: python-scipy: Update to 1.12.0.

* gnu/packages/python-science.scm (python-scipy): Update to 1.12.0.
[propagated-inputs]: Add python-jupytext, python-mpmath, python-mypy,
python-numpydoc, python-pydata-sphinx-theme, python-pydevtool,
python-rich-click, python-sphinx, python-threadpoolctl, and
python-typing-extensions; remove python-pyparsing.
[native-inputs]: Add python-hypothesis, python-pycodestyle, python-pytest-cov,
and python-pytest-xdist; remove python-threadpoolctl.

Change-Id: I81a4831e3d94c58416f7d35ec47de90370b88210

gnu: r-desctools: Update to 0.99.53.

* gnu/packages/statistics.scm (r-desctools): Update to 0.99.53.

Change-Id: I425b37907b51a93fafa193d217bdf68636f608a7

gnu: r-plotly: Update to 4.10.4.

* gnu/packages/statistics.scm (r-plotly): Update to 4.10.4.

Change-Id: Idd10685b1ab521056e0468f0c0c188543c11c96a

gnu: r-xml: Update to 3.99-0.16.1.

* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.16.1.

Change-Id: I2936eac03ec20b091e45b920f946d92028099973

gnu: r-rsqlite: Update to 2.3.5.

* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.5.

Change-Id: I43e95bc4ff0b0dc36cf9f3de1705d63bc5681286

gnu: r-roxygen2: Update to 7.3.1.

* gnu/packages/statistics.scm (r-roxygen2): Update to 7.3.1.

Change-Id: I5d23ee576beb4dc4dc1e49d13cc38ffef0d33512

gnu: r-maldiquant: Update to 1.22.2.

* gnu/packages/cran.scm (r-maldiquant): Update to 1.22.2.

Change-Id: Ia483cff36bb3a2cbf4b691bb4832ce98757aabe0

gnu: r-modeldata: Update to 1.3.0.

* gnu/packages/cran.scm (r-modeldata): Update to 1.3.0.

Change-Id: Ibaef5366948e9ca45325d279a99f14417ca43e8e

gnu: r-yardstick: Update to 1.3.0.

* gnu/packages/cran.scm (r-yardstick): Update to 1.3.0.
[propagated-inputs]: Add r-withr.

Change-Id: I00a5d74cca4396e685df32f85d998004a3e94edc

gnu: r-lightgbm: Update to 4.3.0.

* gnu/packages/cran.scm (r-lightgbm): Update to 4.3.0.

Change-Id: I9da6fbcf9558f1ed47b41abd7183f3c53ba1ec67

gnu: r-rstanarm: Update to 2.32.1.

* gnu/packages/cran.scm (r-rstanarm): Update to 2.32.1.

Change-Id: Ib83276a66add397aeacd830803f94f713f0c22e3

gnu: r-matrixextra: Update to 0.1.15.

* gnu/packages/cran.scm (r-matrixextra): Update to 0.1.15.

Change-Id: I72c274e3075cc40d0f6aafb8199a4594c1a518c6

gnu: r-graphlayouts: Update to 1.1.0.

* gnu/packages/cran.scm (r-graphlayouts): Update to 1.1.0.

Change-Id: I5056c2158af15aeed9d5b53a52149e67d6d50b56

gnu: r-mcmcpack: Update to 1.7-0.

* gnu/packages/cran.scm (r-mcmcpack): Update to 1.7-0.

Change-Id: I2e480dee05c23158b9ab58de5f9a90e623a7f6b2

gnu: r-ggfun: Update to 0.1.4.

* gnu/packages/cran.scm (r-ggfun): Update to 0.1.4.

Change-Id: I08cf695cd03bf28aaa2f2b7b4a35c6632a7027c4