gnu: Add r-scenic.

* gnu/packages/bioinformatics.scm (r-scenic): New variable.

Change-Id: Iff1f501a406ba1a12e49093a575e03facc98f303

gnu: python-scipy: Update to 1.12.0.

* gnu/packages/python-science.scm (python-scipy): Update to 1.12.0.
[propagated-inputs]: Add python-jupytext, python-mpmath, python-mypy,
python-numpydoc, python-pydata-sphinx-theme, python-pydevtool,
python-rich-click, python-sphinx, python-threadpoolctl, and
python-typing-extensions; remove python-pyparsing.
[native-inputs]: Add python-hypothesis, python-pycodestyle, python-pytest-cov,
and python-pytest-xdist; remove python-threadpoolctl.

Change-Id: I81a4831e3d94c58416f7d35ec47de90370b88210

gnu: r-desctools: Update to 0.99.53.

* gnu/packages/statistics.scm (r-desctools): Update to 0.99.53.

Change-Id: I425b37907b51a93fafa193d217bdf68636f608a7

gnu: r-plotly: Update to 4.10.4.

* gnu/packages/statistics.scm (r-plotly): Update to 4.10.4.

Change-Id: Idd10685b1ab521056e0468f0c0c188543c11c96a

gnu: r-xml: Update to 3.99-0.16.1.

* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.16.1.

Change-Id: I2936eac03ec20b091e45b920f946d92028099973

gnu: r-rsqlite: Update to 2.3.5.

* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.5.

Change-Id: I43e95bc4ff0b0dc36cf9f3de1705d63bc5681286

gnu: r-roxygen2: Update to 7.3.1.

* gnu/packages/statistics.scm (r-roxygen2): Update to 7.3.1.

Change-Id: I5d23ee576beb4dc4dc1e49d13cc38ffef0d33512

gnu: r-maldiquant: Update to 1.22.2.

* gnu/packages/cran.scm (r-maldiquant): Update to 1.22.2.

Change-Id: Ia483cff36bb3a2cbf4b691bb4832ce98757aabe0

gnu: r-modeldata: Update to 1.3.0.

* gnu/packages/cran.scm (r-modeldata): Update to 1.3.0.

Change-Id: Ibaef5366948e9ca45325d279a99f14417ca43e8e

gnu: r-yardstick: Update to 1.3.0.

* gnu/packages/cran.scm (r-yardstick): Update to 1.3.0.
[propagated-inputs]: Add r-withr.

Change-Id: I00a5d74cca4396e685df32f85d998004a3e94edc

gnu: r-lightgbm: Update to 4.3.0.

* gnu/packages/cran.scm (r-lightgbm): Update to 4.3.0.

Change-Id: I9da6fbcf9558f1ed47b41abd7183f3c53ba1ec67

gnu: r-rstanarm: Update to 2.32.1.

* gnu/packages/cran.scm (r-rstanarm): Update to 2.32.1.

Change-Id: Ib83276a66add397aeacd830803f94f713f0c22e3

gnu: r-matrixextra: Update to 0.1.15.

* gnu/packages/cran.scm (r-matrixextra): Update to 0.1.15.

Change-Id: I72c274e3075cc40d0f6aafb8199a4594c1a518c6

gnu: r-graphlayouts: Update to 1.1.0.

* gnu/packages/cran.scm (r-graphlayouts): Update to 1.1.0.

Change-Id: I5056c2158af15aeed9d5b53a52149e67d6d50b56

gnu: r-mcmcpack: Update to 1.7-0.

* gnu/packages/cran.scm (r-mcmcpack): Update to 1.7-0.

Change-Id: I2e480dee05c23158b9ab58de5f9a90e623a7f6b2

gnu: r-ggfun: Update to 0.1.4.

* gnu/packages/cran.scm (r-ggfun): Update to 0.1.4.

Change-Id: I08cf695cd03bf28aaa2f2b7b4a35c6632a7027c4

gnu: r-rmpfr: Update to 0.9-5.

* gnu/packages/cran.scm (r-rmpfr): Update to 0.9-5.

Change-Id: I32ba06d98406989aca7129f9f647e836e06663f8

gnu: r-bigrquery: Update to 1.5.0.

* gnu/packages/cran.scm (r-bigrquery): Update to 1.5.0.
[propagated-inputs]: Remove r-assertthat, r-glue, r-progress, r-rcpp, and r-withr; add
r-clock and r-cpp11.

Change-Id: I3f1eb2e32ce901231303a2eb905e8fd7aa0f995a

gnu: r-fmsb: Update to 0.7.6.

* gnu/packages/cran.scm (r-fmsb): Update to 0.7.6.

Change-Id: I9acec8e49ba036f263223a37c53cf9d4a82ba59f

gnu: r-quickjsr: Update to 1.1.0.

* gnu/packages/cran.scm (r-quickjsr): Update to 1.1.0.

Change-Id: Ic2fb19a11c781c25b63cc2ed1bf185201aca0fe8