gnu: Add isolator.

* gnu/packages/bioinformatics.scm (isolator): New variable.

Change-Id: I950baca5b6898576f358b3364b1fe541b3333298

ci: Don't cross compile to or1k-elf.

* gnu/ci.scm (cross-jobs)[pointless?]: Don't build any packages for or1k-elf.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
Change-Id: I294429d5318b94fb8e7780a37f3608b5321cf6ca

gnu: Add metal.

* gnu/packages/bioinformatics.scm (metal): New variable.

Change-Id: I70fd30c18303f61a9f6720e70d4b4e57140a7140

gnu: Add randfold.

* gnu/packages/bioinformatics.scm (randfold): New variable.

Change-Id: If2cea9c8d5323296015dc21ea7a3d1b677ae2798

gnu: Add python-pyfasta.

* gnu/packages/bioinformatics.scm (python-pyfasta): New variable.

Change-Id: Ib2ab0a6eb250309633d5be33c18409227bce84ba

gnu: Add python-fcsparser.

* gnu/packages/bioinformatics.scm (python-fcsparser): New variable.

Change-Id: I87ed7f10bbfdf7d689cb6289a5f5ad31872f9de0

gnu: Add lsgkm.

* gnu/packages/bioinformatics.scm (lsgkm): New variable.

Change-Id: I0ea35354c7856e7425567cd4ac27ab7fc2ab0d9e

gnu: icecat: Update to 115.7.0-guix0-preview1 [security fixes].

Includes fixes for CVE-2024-0741, CVE-2024-0742, CVE-2024-0746,
CVE-2024-0747, CVE-2024-0749, CVE-2024-0750, CVE-2024-0751,
CVE-2024-0753, and CVE-2024-0755.

* gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.

Revert "gnu: source-highlight: Wrap scripts."

This package causes the rebuild of more than 9000 packages.

This reverts commit 367bc2d198f57bc34522441820f761b61fed0ce0.

gnu: kubo: Update to 0.18.0.

* gnu/packages/ipfs.scm (kubo): Update to 0.18.0.
  [inputs]: Add go-github-com-gorilla-mux.

Change-Id: I4eccdfcf9eadbdf25728fcca766c5238efb0d57f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: source-highlight: Wrap scripts.

* gnu/packages/pretty-print.scm (source-highlight)[arguments]: Add a
phase to wrap shell scripts so they can find the source-hightlight
binary.
[inputs]: Add guile-3.0.

Change-Id: Ia8d006d969385210d5c82b4a0dd1f78178306ac2

gnu: trurl: Update to 0.9.

* gnu/packages/curl.scm (trurl): Update to 0.9.

Change-Id: Ieb0f19e6d48897dceb32e317613a301f521c9b94

gnu: Add eddylab-squid.

* gnu/packages/bioinformatics.scm (eddylab-squid): New variable.

Change-Id: Icb02f42fc95d2001a639e22608a01ef9074158bc

gnu: Add python-magic-impute.

* gnu/packages/bioinformatics.scm (python-magic-impute): New variable.

Change-Id: Iba5240e9920a1045078c736553cb1d56069963b5

gnu: Add python-graphtools.

* gnu/packages/graph.scm (python-graphtools): New variable.

Change-Id: If08b1460447702f7ec2e64f013a52a7065076b01

gnu: Add python-tasklogger.

* gnu/packages/python-xyz.scm (python-tasklogger): New variable.

Change-Id: I53319b70b7788090e8873a912d7c56044c0bb5b2

gnu: python-nose2: Update to 0.14.0.

* gnu/packages/check.scm (python-nose2): Update to 0.14.0.
[native-inputs]: Remove python-coverage.
[propagated-inputs]: Remove python-six.

Change-Id: I15a30723fe49cca9929524e543d12c9e2f4b02ca

gnu: python-scikit-learn: Disable one test.

This test fails with the upgrade of scipy.

* gnu/packages/machine-learning.scm (python-scikit-learn)[arguments]: Disable
test_singular_matrix test.

Change-Id: I47627403826bb5c52f4d578399c7cabaa3f8838d

gnu: Add python-pygsp.

* gnu/packages/graph.scm (python-pygsp): New variable.

Change-Id: I8dd195216617e5cdb4a7453ecbe23cd9ff9e06a3

gnu: Add r-scenic.

* gnu/packages/bioinformatics.scm (r-scenic): New variable.

Change-Id: Iff1f501a406ba1a12e49093a575e03facc98f303