~ruther/guix-local

b9a5c50d8c92a7ec6f15b2ec9005d1bbd72d1024 — Ricardo Wurmus 2 years ago 25f0964
gnu: Add metal.

* gnu/packages/bioinformatics.scm (metal): New variable.

Change-Id: I70fd30c18303f61a9f6720e70d4b4e57140a7140
1 files changed, 39 insertions(+), 0 deletions(-)

M gnu/packages/bioinformatics.scm
M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +39 -0
@@ 8108,6 8108,45 @@ probabilistic distances of genome abundance and tetranucleotide frequency.")
    (license (license:non-copyleft "file://license.txt"
                                   "See license.txt in the distribution."))))

(define-public metal
  (package
    (name "metal")
    (version "2011-03-25")
    (source
     (origin
       (method url-fetch)
       (uri (string-append "http://csg.sph.umich.edu/abecasis/Metal/"
                           "download/generic-metal-" version ".tar.gz"))
       (sha256
        (base32
         "1bk00hc0xagmq0mabmbb8bykl75qd4kfyirba869h4x6hmn4a0f3"))))
    (build-system gnu-build-system)
    (arguments
     (list
      #:tests? #f
      #:make-flags
      #~(list (string-append "INSTALLDIR=" #$output "/bin") "all")
      #:phases
      '(modify-phases %standard-phases
         (replace 'configure
           (lambda _
             (substitute* "Makefile"
               (("^CFLAGS=") "CFLAGS=-std=c++11 ")))))))
    (inputs (list zlib `(,zlib "static")))
    (home-page "http://csg.sph.umich.edu/abecasis/Metal/")
    (synopsis "Facilitate meta-analysis of large datasets")
    (description "METAL is a tool for meta-analysis genomewide association
scans.  METAL can combine either test statistics and standard errors or
p-values across studies (taking sample size and direction of effect into
account).  METAL analysis is a convenient alternative to a direct analysis of
merged data from multiple studies.  It is especially appropriate when data
from the individual studies cannot be analyzed together because of differences
in ethnicity, phenotype distribution, gender or constraints in sharing of
individual level data imposed.  Meta-analysis results in little or no loss of
efficiency compared to analysis of a combined dataset including data from all
individual studies.")
    (license license:bsd-3)))

(define-public minced
  (package
    (name "minced")