~ruther/guix-local

ref: 7665fb39f594c1423b56c9eb86ee8e6ef1cde407 guix-local/gnu/packages/bioinformatics.scm -rw-r--r-- 436.5 KiB
7665fb39 — Ricardo Wurmus 8 years ago 
gnu: r-biocstyle: Update to 2.6.1.

* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.6.1.
756ac725 — Ricardo Wurmus 8 years ago 
gnu: r-dexseq: Update to 1.24.2.

* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.2.
8d11ef44 — Ricardo Wurmus 8 years ago 
gnu: r-vegan: Update to 2.4-5.

* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-5.
f1a2b1cb — Ricardo Wurmus 8 years ago 
gnu: r-seurat: Update to 2.1.0.

* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.1.0.
[propagated-inputs]: Add r-diffusionmap, r-dtw, r-ggjoy, r-hmisc, r-ica,
r-mass, r-matrix, r-nmf, r-plotly, r-sdmtools, r-tidyr; remove r-plyr,
r-rcppeigen, r-fastica.
8271b8d2 — Ricardo Wurmus 8 years ago 
gnu: r-seurat: Fix ModularityOptimizer.jar.

* gnu/packages/bioinformatics.scm (r-seurat)[arguments]: Include Main-Class
attribute in manifest.
6098a386 — Ben Woodcroft 8 years ago 
gnu: bedtools: Update to 2.27.1.

* gnu/packages/ruby.scm (bedtools): Update to 2.27.1.
4e0b3583 — Ben Woodcroft 8 years ago 
gnu: diamond: Update to 0.9.14.

* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.14.
9cf5f134 — Christopher Baines 8 years ago 
gnu: Switch to using the version-major procedure.

* gnu/packages/audio.scm (ardour)[arguments]: Switch to using version-major.
  (hmmer)[source]: Switch to using version-major.
  (pidgin)[native-search-paths]: Switch to using version-major.
  (r-minimal)[source]: Switch to using version-major.
83b9d121 — Ricardo Wurmus 8 years ago 
gnu: bedtools-2.18: Fix build.

* gnu/packages/bioinformatics.scm (bedtools-2.18)[arguments]: Restore custom
install phase.

Reported by Mark H Weaver <mhw@netris.org>.
0d9824cc — Ricardo Wurmus 8 years ago 
gnu: bedtools: Update to 2.27.0.

* gnu/packages/bioinformatics.scm (bedtools): Update to 2.27.0.
[arguments]: Remove custom "install" phase; specify prefix.
d112e5a8 — Ricardo Wurmus 8 years ago 
gnu: Add kallisto.

* gnu/packages/bioinformatics.scm (kallisto): New variable.
117d8cc4 — Ricardo Wurmus 8 years ago 
gnu: jellyfish: Update to 2.2.7.

* gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.7.
[native-inputs]: Add pkg-config.
[inputs]: Add htslib.
9b8d0201 — Ricardo Wurmus 8 years ago 
gnu: r-annotationhub: Update to 2.10.1.

* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.1.
87e91a9f — Ricardo Wurmus 8 years ago 
gnu: r-msnid: Update to 1.12.1.

* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.12.1.
43949265 — Ricardo Wurmus 8 years ago 
gnu: r-maldiquant: Update to 1.17.

* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.17.
06e8e0fc — Ricardo Wurmus 8 years ago 
gnu: r-genomicalignments: Update to 1.14.1.

* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.1.
1ce5d32b — Ricardo Wurmus 8 years ago 
gnu: r-limma: Update to 3.34.2.

* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.2.
8131cf41 — Ricardo Wurmus 8 years ago 
gnu: r-variantannotation: Update to 1.24.2.

* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.2.
d2081a17 — Ricardo Wurmus 8 years ago 
gnu: r-getopt: Update to 1.20.1.

* gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.1.
4220ab0c — Ricardo Wurmus 8 years ago 
gnu: r-gseabase: Update to 1.40.1.

* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.1.
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