~ruther/guix-local: gnu: jellyfish: Update to 2.2.7.

117d8cc40e9983098a080fe41cce7684b312351c — Ricardo Wurmus 8 years ago f1b90a2

gnu: jellyfish: Update to 2.2.7.

* gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.7.
[native-inputs]: Add pkg-config.
[inputs]: Add htslib.

patch browse .tar.gz

1 files changed, 6 insertions(+), 3 deletions(-)

M gnu/packages/bioinformatics.scm

M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +6 -3

@@ 3292,7 3292,7 @@ experiments and provide highly stable thresholds based on reproducibility.")
 (define-public jellyfish
   (package
     (name "jellyfish")
-    (version "2.2.4")
+    (version "2.2.7")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/gmarcais/Jellyfish/"


@@ 3300,7 3300,7 @@ experiments and provide highly stable thresholds based on reproducibility.")
                                   "/jellyfish-" version ".tar.gz"))
               (sha256
                (base32
-                "0a6xnynqy2ibfbfz86b9g2m2dgm7f1469pmymkpam333gi3p26nk"))))
+                "1a1iwq9pq54k2m9ypvwl5s0bqfl64gwh9dx5af9i382ajas2016q"))))
     (build-system gnu-build-system)
     (outputs '("out"      ;for library
                "ruby"     ;for Ruby bindings


@@ 3323,7 3323,10 @@ experiments and provide highly stable thresholds based on reproducibility.")
      `(("bc" ,bc)
        ("time" ,time)
        ("ruby" ,ruby)
-       ("python" ,python-2)))
+       ("python" ,python-2)
+       ("pkg-config" ,pkg-config)))
+    (inputs
+     `(("htslib" ,htslib)))
     (synopsis "Tool for fast counting of k-mers in DNA")
     (description
      "Jellyfish is a tool for fast, memory-efficient counting of k-mers in