~ruther/guix-local

ref: 36f0c9f2df2a76ae3bc43577b2e5a499ece69dbf guix-local/gnu/packages/bioinformatics.scm -rw-r--r-- 211.3 KiB
aeafff53 — Ludovic Courtès 9 years ago 
Merge branch 'master' into core-updates
698bd297 — Hartmut Goebel 9 years ago 
gnu: Use full SHA1 commit ids.

* gnu/packages/bioinformatics.scm (pbtranscript-tofu, mosaik,
  smithlab-cpp, piranha): Use full SHA1 commit ids.
* gnu/packages/ci.scm (hydra): Likewise.
* gnu/packages/compression.scm (sfarkxtc): Likewise.
* gnu/packages/emacs.scm (emacs-ob-ipython): Likewise.
* gnu/packages/games.scm (mars, emulation-station): Likewise.
* gnu/packages/gnunet.scm (guile-gnunet): Likewise.
* gnu/packages/music.scm (non-sequencer): Likewise.
* gnu/packages/version-control.scm (git-flow, git-test-sequence): Likewise.
* gnu/packages/xorg.scm (xf86-video-intel): Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
6ac0a0fb — Ben Woodcroft 9 years ago 
gnu: diamond: Update to 0.8.5.

* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.5.
64efa307 — Ricardo Wurmus 9 years ago 
gnu: Add r-genomationdata.

* gnu/packages/bioinformatics.scm (r-genomationdata): New variable.
9fcc3509 — Ben Woodcroft 9 years ago 
gnu: Update diamond to 0.8.3.

* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.3.
bc73a843 — Ludovic Courtès 9 years ago 
Merge branch 'master' into core-updates
07837874 — Ricardo Wurmus 9 years ago 
gnu: Add ParDRe.

* gnu/packages/bioinformatics.scm (pardre): New variable.
7740f581 — Ricardo Wurmus 9 years ago 
gnu: r-genomation: Update to 1.4.2.

* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.2.
8ede249e — Ricardo Wurmus 9 years ago 
gnu: r-genomicfeatures: Update to 1.24.2.

* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.2.
192e1ea8 — Ricardo Wurmus 9 years ago 
gnu: r-summarizedexperiment: Update to 1.2.2.

* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.2.
d7420566 — Ricardo Wurmus 9 years ago 
gnu: r-biocparallel: Update to 1.6.2.

* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.2.
73af676f — Ricardo Wurmus 9 years ago 
gnu: r-annotationdbi: Update to 1.34.2.

* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.2.
679e670b — Ricardo Wurmus 9 years ago 
gnu: r-variantannotation: Update to 1.18.1.

* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.1.
186ed873 — Ricardo Wurmus 9 years ago 
gnu: r-genomeinfodb: Update to 1.8.1.

* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.1.
7c544991 — Ben Woodcroft 9 years ago 
gnu: diamond: Do not specify target architecture.

* gnu/packages/bioinformatics.scm (diamond)[arguments]: Do not
specify target architecture.
e62ffce5 — Ricardo Wurmus 10 years ago 
gnu: Add Piranha.

* gnu/packages/bioinformatics.scm (piranha): New variable.
849485f5 — Ben Woodcroft 9 years ago 
gnu: sortmerna: Update to 2.1b.

* gnu/packages/bioinformatics.scm (sortmerna): Update to 2.1b.
[inputs]: New field.
daaeed76 — Ben Woodcroft 9 years ago 
gnu: vsearch: Update to 1.11.1.

* gnu/packages/bioinformatics.scm (vsearch): Update to 1.11.1.
122395f9 — Ben Woodcroft 9 years ago 
gnu: diamond: Update to 0.8.1.

* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.1.
[source]: Remove 'snippet'.
[build-system]: Use cmake-build-system.
[arguments]: Remove modifications to phases.
[native-inputs]: Remove field.
[inputs]: Remove 'boost'.
96101b67 — Ricardo Wurmus 10 years ago 
gnu: r-zlibbioc: Update to 1.18.0.

* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.18.0.
Next