@@ 3885,6 3885,47 @@ Needleman-Wunsch).")
;; Dual licensed; also includes public domain source.
(license (list license:gpl3 license:bsd-2))))
+(define-public pardre
+ (package
+ (name "pardre")
+ (version "1.1.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "mirror://sourceforge/pardre/ParDRe-rel"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0zkyjzv4s8q2h5npalhirbk17r5b1h0n2a42mh7njzlf047h9bhy"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:tests? #f ; no tests included
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((bin (string-append (assoc-ref outputs "out") "/bin")))
+ (mkdir-p bin)
+ (install-file "ParDRe" bin)
+ #t))))))
+ (inputs
+ `(("openmpi" ,openmpi)
+ ("zlib" ,zlib)))
+ (synopsis "Parallel tool to remove duplicate DNA reads")
+ (description
+ "ParDRe is a parallel tool to remove duplicate genetic sequence reads.
+Duplicate reads can be seen as identical or nearly identical sequences with
+some mismatches. This tool lets users avoid the analysis of unnecessary
+reads, reducing the time of subsequent procedures with the
+dataset (e.g. assemblies, mappings, etc.). The tool is implemented with MPI
+in order to exploit the parallel capabilities of multicore clusters. It is
+faster than multithreaded counterparts (end of 2015) for the same number of
+cores and, thanks to the message-passing technology, it can be executed on
+clusters.")
+ (home-page "https://sourceforge.net/projects/pardre/")
+ (license license:gpl3+)))
+
(define-public bio-locus
(package
(name "bio-locus")