gnu: u-boot: Update to 2017.07. * gnu/packages/bootloaders.scm (u-boot): Update to 2017.07.
gnu: tevent: Update to 0.9.33. * gnu/packages/samba.scm (tevent): Update to 0.9.33.
gnu: talloc: Update to 2.1.10. * gnu/packages/samba.scm (talloc): Update to 2.1.10.
gnu: ldb: Update to 1.1.31. * gnu/packages/samba.scm (ldb): Update to 1.1.31. [native-inputs]: Add CMOCKA.
gnu: cmocka: Update to 1.1.1. * gnu/packages/check.scm (cmocka): Update to 1.1.1.
gnu: tdb: Update to 1.3.14. * gnu/packages/databases.scm (tdb): Update to 1.3.14.
gnu: python-scipy: Update to 0.19.1. * gnu/packages/python.scm (python-scipy): Update to 0.19.1. [source]: Use 'pypi-uri'.
gnu: python-matplotlib: Update to 2.0.2. * gnu/packages/python.scm (python-matplotlib): Update to 2.0.2. [source]: Use 'pypi-uri'.
gnu: python-pyparsing: Update to 2.2.0. * gnu/packages/python.scm (python-pyparsing, python2-pyparsing): Update to 2.2.0.
gnu: python-pyparsing: Use 'modify-phases' syntax. * gnu/packages/python.scm (python-pyparsing)[arguments]<#:phases>: Use 'modify-phases'.
gnu: Add xmobar. gnu/packages/wm.scm (xmobar): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
gnu: bash-completion: Update to 2.7. * gnu/packages/bash.scm (bash-completion): Update to 2.7.
gnu: getmail: Update to 5.1. * gnu/packages/mail.scm (getmail): Update to 5.1. Signed-off-by: Leo Famulari <leo@famulari.name>
gnu: metabat: Update to 2.11.1. * gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1. [source]: Add patch to fix compilation. [arguments]: Adjust regular expressions modifying 'SConstruct'. * gnu/packages/patches/metabat-fix-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
gnu: python-plastid: Update to 0.4.8. * gnu/packages/bioinformatics.scm (python-plastid): Update to 0.4.8.
gnu: bcftools: Update to 1.5. * gnu/packages/bioinformatics.scm (bcftools): Update to 1.5. [origin]: Remove fix-makefile patch. [arguments]: Add configure flags, add LIBS make flag. Do not delete configure phase. * gnu/packages/patches/bcftools-fix-makefile.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
gnu: samtools: Update to 1.5. * gnu/packages/bioinformatics.scm (samtools): Update to 1.5.
gnu: htslib: Update to 1.5. * gnu/packages/bioinformatics.scm (htslib): Update to 1.5.
gnu: python-pysam: Update to 0.11.2.2. * gnu/packages/bioinformatics.scm (python-pysam): Update to 0.11.2.2.
gnu: bamm: Use htslib-1.3. * gnu/packages/bioinformatics (htslib-1.3): New variable. (bamm)[inputs]: Replace htslib with htslib-1.3.