~ruther/guix-local

ref: 0ff55f9d77af987236796d3594de63d6903fa15f guix-local/gnu/packages/bioinformatics.scm -rw-r--r-- 311.3 KiB
a225db52 — Ben Woodcroft 9 years ago 
gnu: vsearch: Update to 2.3.4.

* gnu/packages/bioinformatics.scm (vsearch): Update to 2.3.4.
7922ab8f — Ben Woodcroft 9 years ago 
gnu: pardre: Update to 1.1.5-1.

* gnu/packages/bioinformatics.scm (pardre): update to 1.1.5-1.
[source]: Update source hash.
1b7f17ef — Ben Woodcroft 9 years ago 
gnu: vsearch: Update to 2.3.3.

* gnu/packages/bioinformatics.scm (vsearch): Update to 2.3.3.
e990c81d — Ben Woodcroft 9 years ago 
gnu: aragorn: Update to 1.2.38.

* gnu/packages/bioinformatics.scm (aragorn): Update to 1.2.38.
03e856dd — Hartmut Goebel 9 years ago 
Merge branch 'python-build-system'.
3bf42806 — Hartmut Goebel 9 years ago 
Merge branch 'master' into python-build-system
bd3be46e — Ricardo Wurmus 9 years ago 
gnu: Add r-gkmsvm.

* gnu/packages/bioinformatics.scm (r-gkmsvm): New variable.
2d9fb170 — Ricardo Wurmus 9 years ago 
gnu: Add r-seqgl.

* gnu/packages/bioinformatics.scm (r-seqgl): New variable.
c827f202 — Ricardo Wurmus 9 years ago 
gnu: Add r-chipkernels.

* gnu/packages/bioinformatics.scm (r-chipkernels): New variable.
d7160529 — Ricardo Wurmus 9 years ago 
gnu: Add r-wgcna.

* gnu/packages/bioinformatics.scm (r-wgcna): New variable.
e619a5c2 — Ricardo Wurmus 9 years ago 
gnu: Add r-r4rna.

* gnu/packages/bioinformatics.scm (r-r4rna): New variable.
99268755 — Ben Woodcroft 9 years ago 
gnu: Add newick-utils.

* gnu/packages/bioinformatics.scm (newick-utils): New variable.
5e0a0f42 — Ben Woodcroft 9 years ago 
gnu: roary: Update to 3.7.0.

* gnu/packages/bioinformatics.scm (roary): Update to 3.7.0.
31a9d653 — Ben Woodcroft 9 years ago 
gnu: Add proteinortho.

* gnu/packages/bioinformatics.scm (proteinortho): New variable.
de32aa74 — Leo Famulari 9 years ago 
Merge branch 'master' into python-build-system
8e5f8c98 — Ben Woodcroft 9 years ago 
gnu: diamond: Update to 0.8.27.

* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.27.
daf72603 — Petter 9 years ago 
gnu: Remove redundancy where mkdir-p <dir> is followed by install-file <file> <dir>.

* gnu/packages/bioinformatics.scm (bwa)[arguments]: Remove redundant mkdir-p.
(eigensoft)[arguments]: Likewise.
(snap-aligner)[arguments]: Likewise.
(pardre)[arguments]: Likewise.
(piranha)[arguments]: Likewise.
* gnu/packages/maths.scm (hypre)[arguments]: Likewise.
* gnu/packages/mp3.scm (mpc123)[arguments]: Likewise.
* gnu/packages/music.scm (tuxguitar)[arguments]: Likewise.
* gnu/packages/pdf.scm (impressive)[arguments]: Likewise.
* gnu/packages/qemu.scm (qemu)[arguments]: Likewise.

Signed-off-by: Leo Famulari <leo@famulari.name>
de5bc890 — Hartmut Goebel 9 years ago 
gnu: python2-pbcore: Fix inputs:

* gnu/packages/bioinformatics.scm (python2-pbcore) [inputs] change to
  [propagated-inputs]. [native-inputs]: Remove python-docutils, which
  comes with sphinx. [former propagated-inputs]: move all (which is only
  pyxb) to [inputs].
54c85e12 — Hartmut Goebel 9 years ago 
gnu: python2-warpedlmm: Remove phase remove-bin-directory.

This directory did contain contain wrappers for `nose`, which should not
be there anyway (since nose already was a native-input). The new
python build system no longer creates this directory, while the old one
did. (This difference is due to the bloody details of how packages are
installed.)

* gnu/packages/bioinformatics.scm (python2-warpedlmm)
  [modify-phases] Remove, since remove-bin-directory was the only
  modification here.
f2516de2 — Hartmut Goebel 9 years ago 
gnu: Fix python inputs, part 7: Ensure python-cython is a native-input.

* gnu/packages/audio.scm (python-pyliblo): [inputs] Move python-cyton to
  [native-inputs].
* gnu/packages/bioinformatics.scm (python2-pybedtools): dito.
* gnu/packages/music.scm (beast, python-pyportmidi): dito.
* gnu/packages/python.scm (python2-fastlmm, python-kivy): dito.
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