~ruther/guix-local

d71605294fff1a12f3145fa4788da1556284c91c — Ricardo Wurmus 9 years ago 1bd46f5
gnu: Add r-wgcna.

* gnu/packages/bioinformatics.scm (r-wgcna): New variable.
1 files changed, 36 insertions(+), 0 deletions(-)

M gnu/packages/bioinformatics.scm
M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +36 -0
@@ 7541,6 7541,42 @@ characterization and visualization of a wide range of mutational patterns
in SNV base substitution data.")
    (license license:expat)))

(define-public r-wgcna
  (package
    (name "r-wgcna")
    (version "1.51")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "WGCNA" version))
       (sha256
        (base32
         "0hzvnhw76vwg8bl8x368f0c5szpwb8323bmrb3bir93i5bmfjsxx"))))
    (properties `((upstream-name . "WGCNA")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-annotationdbi" ,r-annotationdbi)
       ("r-doparallel" ,r-doparallel)
       ("r-dynamictreecut" ,r-dynamictreecut)
       ("r-fastcluster" ,r-fastcluster)
       ("r-foreach" ,r-foreach)
       ("r-go-db" ,r-go-db)
       ("r-hmisc" ,r-hmisc)
       ("r-impute" ,r-impute)
       ("r-matrixstats" ,r-matrixstats)
       ("r-preprocesscore" ,r-preprocesscore)))
    (home-page
     "http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/")
    (synopsis "Weighted correlation network analysis")
    (description
     "This package provides functions necessary to perform Weighted
Correlation Network Analysis on high-dimensional data.  It includes functions
for rudimentary data cleaning, construction and summarization of correlation
networks, module identification and functions for relating both variables and
modules to sample traits.  It also includes a number of utility functions for
data manipulation and visualization.")
    (license license:gpl2+)))

(define-public emboss
  (package
    (name "emboss")