~ruther/guix-local

ref: 0ca1eb705d29c20f901fc385ee4e1bb1eaa52f75 guix-local/gnu/packages/bioinformatics.scm -rw-r--r-- 127.0 KiB
4d75e03a — Ricardo Wurmus 10 years ago 
gnu: bless: Correct indentation and home-page.

* gnu/packages/bioinformatics.scm (bless): Fix indentation.
  [home-page]: Replace broken URL.
6c2b26e2 — Ricardo Wurmus 10 years ago 
gnu: Add BLESS.

* gnu/packages/bioinformatics.scm (bless): New variable.

Co-authored-by: Diane Trout <diane@ghic.org>
60af3d82 — Ricardo Wurmus 10 years ago 
gnu: hisat: Disable build on non-x86_64.

* gnu/packages/bioinformatics.scm (hisat)[supported-systems]: Add field.
f3674b1c — Ben Woodcroft 10 years ago 
gnu: Add express-beta-diversity.

* gnu/packages/bioinformatics.scm (express-beta-diversity): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
eed588d9 — 宋文武 10 years ago 
Merge branch 'master' into dbus-update
9a067efd — Ricardo Wurmus 10 years ago 
gnu: pbtranscript-tofu: Update to 2.2.3.

* gnu/packages/bioinformatics.scm (pbtranscript-tofu): Update to 2.2.3.
  [source]: Remove bundled Cython sources in a snippet.  Replace
  ".tar.gz" extension in file-name field with "-checkout".
  [arguments]: Replace "enter-directory-and-clean-up" phase with
  "enter-directory" phase, and add "patch-setuppy" phase.
  [inputs]: Add python2-h5py.  Move python2-cython ...
  [native-inputs]: ... to this field.
104c1986 — Ricardo Wurmus 10 years ago 
gnu: subread: Use SSE optimizations on x86_64 only.

* gnu/packages/bioinformatics.scm (subread)[arguments]: Override CC and
  CCFLAGS conditionally dependent on target system.
61d5fd03 — Ricardo Wurmus 10 years ago 
gnu: crossmap: Update to 0.2.1.

* gnu/packages/bioinformatics.scm (crossmap): Update to 0.2.1.
d3365d48 — Mark H Weaver 10 years ago 
Merge branch 'master' into dbus-update
fe4c37c2 — Ricardo Wurmus 10 years ago 
gnu: Add MOSAIK.

* gnu/packages/bioinformatics.scm (mosaik): New variable.
ccb52232 — Mark H Weaver 10 years ago 
Merge branch 'master' into dbus-update
ab29be81 — Andreas Enge 10 years ago 
gnu: ngs-sdk: Correct typo.

* gnu/packages/bioinformatics.scm (ngs-sdk): Correct typo.
a0dadf0c — Andreas Enge 10 years ago 
gnu: ngs-sdk: Remove unsupported systems.

* gnu/packages/bioinformatics.scm (ngs-sdk)[supported-systems]: Keep only x86
  based systems.
d9c44e9c — Ben Woodcroft 10 years ago 
gnu: diamond: Restrict supported systems to x86_64-linux.

* gnu/packages/bioinformatics.scm (diamond) [supported-systems]: Restrict to
  x86_64-linux.
db94f8c7 — Ricardo Wurmus 10 years ago 
gnu: bwa: Disable on non-x86_64.

* gnu/packages/bioinformatics.scm (bwa)[supported-systems]: Add field.
319fe79d — Mark H Weaver 10 years ago 
Merge branch 'master' into core-updates
6f04e515 — Ben Woodcroft 10 years ago 
gnu: vsearch: Restrict supported systems to x86_64-linux.

* gnu/packages/bioinformatics.scm (vsearch)[supported-systems]: Restrict
  to x86_64-linux.

Signed-off-by: Andreas Enge <andreas@enge.fr>
9ab5ea44 — Mark H Weaver 10 years ago 
gnu: clipper: Add 'file-name' field to source origin.

* gnu/packages/bioinformatics.scm (clipper)[source]: Add file-name.
a2950fa4 — Ben Woodcroft 10 years ago 
gnu: Add vsearch.

* gnu/packages/bioinformatics.scm (vsearch): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
b2bddb07 — Pjotr Prins 10 years ago 
gnu: Add bio-blastxmlparser.

* gnu/packages/bioinformatics.scm (bio-blastxmlparser): New variable.
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