~ruther/guix-local

ref: 0c19247ceaee46b6bc53ca22fbe314cc8e5e6ef0 guix-local/gnu/packages/bioinformatics.scm -rw-r--r-- 237.3 KiB
7593e50b — Ben Woodcroft 9 years ago 
gnu: diamond: Update to 0.8.15.

* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.15.
2c0d8e0d — Ricardo Wurmus 9 years ago 
gnu: eigensoft: Do not refer to "lapacke" output.

* gnu/packages/bioinformatics.scm (eigensoft)[inputs]: Remove reference
  to non-existing "lapacke" output.
6619f9c7 — Ricardo Wurmus 9 years ago 
gnu: Add eigensoft.

* gnu/packages/bioinformatics.scm (eigensoft): New variable.
17dc32a4 — Ricardo Wurmus 9 years ago 
gnu: Add Ribotaper.

* gnu/packages/bioinformatics.scm (ribotaper): New variable.
9a8f309c — Ricardo Wurmus 9 years ago 
gnu: Add bedtools-2.18.

* gnu/packages/bioinformatics.scm (bedtools-2.18): New variable.
7f575d3e — Ben Woodcroft 9 years ago 
gnu: diamond: Update to 0.8.12.

* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.12.
ec2a67de — Ben Woodcroft 10 years ago 
gnu: Add python-dendropy.

* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy): New
variables.
* gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
c11f79a4 — Ben Woodcroft 9 years ago 
gnu: star: Restrict supported systems to 64-bit systems.

* gnu/packages/bioinformatics.scm (star)[supported-systems]: Restrict to
x86_64-linux and mips64el-linux.
d285657e — Ben Woodcroft 9 years ago 
gnu: bedtools: Update to 2.26.0.

* gnu/packages/bioinformatics.scm (bedtools): Update to 2.26.0.
7c7643a7 — Ben Woodcroft 9 years ago 
gnu: diamond: Update to 0.8.11.

* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.11.
274da826 — Ricardo Wurmus 9 years ago 
gnu: Add r-seqinr.

* gnu/packages/bioinformatics.scm (r-seqinr): New variable.
8157af2e — Efraim Flashner 9 years ago 
gnu: khmer: Limit to x86_64 systems only.

* gnu/packages/bioinformatics.scm (khmer)[supported-systems]: New field.
5fb5dffb — Ricardo Wurmus 9 years ago 
gnu: Add multiqc.

* gnu/packages/bioinformatics.scm (multiqc): New variable.
1f1b20b8 — Ricardo Wurmus 9 years ago 
gnu: Add bits.

* gnu/packages/bioinformatics.scm (bits): New variable.
66e40e00 — Ricardo Wurmus 9 years ago 
gnu: Add EMBOSS.

* gnu/packages/bioinformatics.scm (emboss): New variable.
744004a3 — Roel Janssen 10 years ago 
gnu: Add r-edger.

* gnu/packages/bioinformatics.scm (r-edger): New variable.
7d4224d7 — Roel Janssen 10 years ago 
gnu: Add r-limma.

* gnu/packages/bioinformatics.scm (r-limma):  New variable.
71830f0e — Ben Woodcroft 10 years ago 
gnu: vsearch: Update to 2.0.1.

*  gnu/packages/bioinformatics.scm (vsearch): Update to 2.0.1.
8dec2229 — Ben Woodcroft 10 years ago 
gnu: blast+: Update to 2.4.0.

* gnu/packages/bioinformatics.scm (blast+): Update to 2.4.0.
3bce0f14 — Ben Woodcroft 10 years ago 
gnu: star: Update to 2.5.2a.

* gnu/packages/bioinformatics.scm (star): Update to 2.5.2a.
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