@@ 4437,6 4437,31 @@ translation between different chromosome sequence naming conventions (e.g.,
names in their natural, rather than lexicographic, order.")
(license license:artistic2.0)))
+(define-public r-edger
+ (package
+ (name "r-edger")
+ (version "3.14.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "edgeR" version))
+ (sha256
+ (base32
+ "14vrygy7rz5ngaap4kgkvr3j18y5l6m742n79h68plk6iqgmsskn"))))
+ (properties `((upstream-name . "edgeR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-limma" ,r-limma)))
+ (home-page "http://bioinf.wehi.edu.au/edgeR")
+ (synopsis "EdgeR does empirical analysis of digital gene expression data")
+ (description "This package can do differential expression analysis of
+RNA-seq expression profiles with biological replication. It implements a range
+of statistical methodology based on the negative binomial distributions,
+including empirical Bayes estimation, exact tests, generalized linear models
+and quasi-likelihood tests. It be applied to differential signal analysis of
+other types of genomic data that produce counts, including ChIP-seq, SAGE and
+CAGE.")
+ (license license:gpl2+)))
+
(define-public r-variantannotation
(package
(name "r-variantannotation")