gnu: r-ggvenn: Add missing test input.

* gnu/packages/cran.scm (r-ggvenn)[native-inputs]: Add r-testthat.

Change-Id: Id2ddbaf3f507d3113af7d77be866f7abd67a50e1

gnu: r-gchain: Update to 0.2.0-2.19f8bb9.

* gnu/packages/bioinformatics.scm (r-gchain): Update to 0.2.0-2.19f8bb9.
[arguments]: Add phase 'biostrings-compatibility; adjust phase
'skip-bad-tests.

Change-Id: Ia8719400b555625dd0067179ee3d142ee2d59ccc

gnu: r-ggmosaic: Make compatible with latest ggplot2.

* gnu/packages/cran.scm (r-ggmosaic)[arguments]: Add phase
'ggplot-compatibility.

Change-Id: I73200b7c0a588ea54deb39f729b15d422a94d4b1

gnu: r-abaenrichment: Adjust for testthat compatibility.

* gnu/packages/bioconductor.scm (r-abaenrichment)[arguments]: Add phase
'testthat-compatibility.

Change-Id: I532339067402d2465b793bb16f6b137c425170ff

gnu: r-tcgautils: Update to 1.30.1.

* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.30.1.

Change-Id: Id7b543c1418e31606733ce7a700dab540116ff12

gnu: r-annotationhubdata: Add missing input.

* gnu/packages/bioconductor.scm (r-annotationhubdata)[native-inputs]: Add
r-genomeinfodbdata.

Change-Id: Iaf0e3635d88c26ff4ed62e638eefe5973b695281

gnu: r-papaja: Add missing input and enable all tests.

* gnu/packages/cran.scm (r-papaja)[native-inputs]: Add r-beeswarm.
[arguments]: Remove phase 'delete-bad-tests.

Change-Id: Iab573e6a373e848977738c319d9e74fe23cde7c4

gnu: r-metabocoreutils: Update to 1.18.1.

* gnu/packages/bioconductor.scm (r-metabocoreutils): Update to 1.18.1.

Change-Id: I20c617e069a0b385e31f6e9bbf31524d81957048

gnu: r-seqminer: Disable two tests.

* gnu/packages/cran.scm (r-seqminer)[arguments]: Add phase 'disable-bad-tests.

Change-Id: I939922a57d8cbd1f50c0dababd527cf4e4144b44

gnu: r-trycatchlog: Adjust for testthat compatibility.

* gnu/packages/cran.scm (r-trycatchlog)[arguments]: Add phase
'testthat-compatibility.

Change-Id: I4ce1676de6b07113aeb772163f698511b5d82bd9

gnu: r-bindr: Adjust for testthat compatibility.

* gnu/packages/cran.scm (r-bindr)[arguments]: Add phase
'testthat-compatibility.

Change-Id: I766680176275e31ef110150b270d29bec8ad8f22

gnu: r-mosaic: Add missing test inputs.

* gnu/packages/cran.scm (r-mosaic)[properties]: Record
updater-extra-native-inputs.
[arguments]: Only skip one test in test-read.file.R.
[native-inputs]: Add r-broom, r-ggdendro, r-ggrepel, and r-latticeextra.

Change-Id: If9ee5ee970ecfaa4b291d92a7f467585ea3a9453

gnu: r-ihw: Add missing test inputs.

* gnu/packages/bioconductor.scm (r-ihw)[properties]: Record
updater-extra-native-inputs.
[native-inputs]: Add r-ggplot2 and r-scales.

Change-Id: I9897da6c9e18ccd4ed401237414c340088a00614

gnu: r-rpresto: Disable tests.

* gnu/packages/cran.scm (r-rpresto)[arguments]: Disable tests.

Change-Id: I988975506092cd70e566171ec4f6dbd00aff99e9

gnu: r-manipulatewidget: Skip bad tests.

* gnu/packages/cran.scm (r-manipulatewidget)[arguments]: Add phase
'testthat-compatibility.

Change-Id: I5d3741de0d68701e8bf972de786e42163bd3af12

gnu: r-rvenn: Skip four tests.

* gnu/packages/cran.scm (r-rvenn)[arguments]: Add phase 'skip-bad-tests.

Change-Id: I5885179790b4a151360f45de83e4e18feccf6267

gnu: r-tidytext: Add missing input.

* gnu/packages/cran.scm (r-tidytext)[native-inputs]: Add r-tidyr.

Change-Id: I7a888dd04d1f36fd4aacf372b02326e02433c844

gnu: r-gutils: Add missing input and patch for testthat compatibility.

* gnu/packages/bioinformatics.scm (r-gutils)[arguments]: Add phase
'testthat-compatibility.
[native-inputs]: Add r-xvector.

Change-Id: I6178bb62486167445921069e0f40e122f10c838e

gnu: r-msigdbr: Enable tests.

The CRAN tarball appears to have been replaced in place shortly after the
initial upload.

* gnu/packages/cran.scm (r-msigdbr)[source]: Update hash.
[arguments]: Remove phase 'disable-bad-tests.

Change-Id: Iff1678e3802178ff344fc7efdee20f897df08f03

gnu: r-rcpparmadillo: Update to 15.2.2-1.

* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 15.2.2-1.

Change-Id: I93d73f3cde00db8fb4ed5b8e693255e2b3eda582