~ruther/guix-local

4812369fa52b48c390bc411b4463b77fd6a3ccb9 — Ricardo Wurmus 11 months ago b44debe 
gnu: r-msigdbr: Enable tests.

The CRAN tarball appears to have been replaced in place shortly after the
initial upload.

* gnu/packages/cran.scm (r-msigdbr)[source]: Update hash.
[arguments]: Remove phase 'disable-bad-tests.

Change-Id: Iff1678e3802178ff344fc7efdee20f897df08f03
patch browse .tar.gz .zip 
1 files changed, 1 insertions(+), 20 deletions(-)

M gnu/packages/cran.scm

M gnu/packages/cran.scm => gnu/packages/cran.scm +1 -20
@@ 37560,27 37560,8 @@ compiled by the HGNC Comparison of Orthology Predictions (HCOP).")
       (uri (cran-uri "msigdbr" version))
       (sha256
        (base32
         "00nhzpkxhkbn01v1xwngqxrlcg37f3m7xlkd3b88lsr2l2fr5596"))))
         "19m3588nw8nl1d5v2394i79hfrghcaylblqvbrfg5w9dfiw5pxbz"))))
    (build-system r-build-system)
    (arguments
     (list
      #:phases
      '(modify-phases %standard-phases
         (add-after 'unpack 'disable-bad-tests
           (lambda _
             ;; These tests attempt to download a data file.
             (substitute* "tests/testthat/test-msigdbr-collections.R"
               ((".*msigdbr_collections\\(\\).*" m)
                (string-append m "skip('skip');\n")))
             (substitute* "tests/testthat/test-msigdbr.R"
               ((".*collections and subcollections.*" m)
                (string-append m "skip('skip');\n"))
               ((".*msigdbr\\(\\) subcollection partial match.*" m)
                (string-append m "skip('skip');\n"))
               ((".*deprecated parameters.*" m)
                (string-append m "skip('skip');\n"))
               ((".*species.*" m)
                (string-append m "skip('skip');\n"))))))))
    (propagated-inputs
     (list r-assertthat
           r-babelgene