scripts: Remove 'max-silent-time' from the default options.
Fixes <http://bugs.gnu.org/27157>.
Having a finite default `max-silent-time' value for scripts such as 'guix
environment' could lead to timeouts when building subtitutes; this was
undesirable.
This change also fixes client behavior to match the documentation, which
is that by default the daemon's settings are honored.
* guix/scripts/archive.scm (%default-options): Remove max-silent-time entry.
* guix/scripts/copy.scm (%default-options): Likewise.
* guix/scripts/environment.scm (%default-options): Likewise.
* guix/scripts/pack.scm (%default-options): Likewise.
* guix/scripts/package.scm (%default-options): Likewise.
* guix/scripts/pull.scm (%default-options): Likewise.
* guix/scripts/system.scm (%default-options): Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
gnu: r-rcas: Correct license.
* gnu/packages/bioinformatics.scm (r-rcas)[license]: Use correct license.
gnu: r-rcas: Update to 1.3.3.
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.3.3.
gnu: mysql: Enable tests on aarch64.
* gnu/packages/databases.scm (mysql)[arguments]: Remove logic disabling
the tests on aarch64-linux.
gnu: vsearch: Update to 2.4.4.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.4.
gnu: metabat: Update to 2.12.1.
* gnu/packages/patches/metabat-remove-compilation-date.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/bioinformatics.scm (metabat): Update to 2.12.1.
[source]: Remove it. Use url-fetch.
gnu: netcdf: Fix reproducibility issue; remove unneeded references.
* gnu/packages/maths.scm (netcdf) [arguments]: Add phase to fix the embedded
'Configured On' date; truncate reference to compiler store item.
gnu: hdf4: Avoid unneeded store references to compilers.
* gnu/packages/maths.scm (hdf4) [arguments]: Add phase 'patch-settings to
truncate hashes of compiler store items.
gnu: hdf5: Avoid unneeded store references to compilers.
* gnu/packages/maths.scm (hdf5) [arguments]: Add phase to patch
"libhdf5.settings", removing references to the C/C++/Fortran compilers.
gnu: hdf5: Add output for fortran interface.
* gnu/packages/maths.scm (hdf5) [native-inputs]: Add gfortran.
[outputs]: Add "fortran".
[arguments]: Enable Fortran compilation; add "/lib" directory of the fortran
output to the runpath of the Fortran libs; add a 'split phase to move
all Fortran-related files to the the Fortran output store location.
gnu: python2-larch: Enable tests.
* gnu/packages/patches/python2-larch-coverage-4.0a6-compatibility.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python2-larch)[source]: Use it.
[arguments]: Move 'check' phase to before 'build' phase.
gnu: python2-ttystatus: Enable tests.
* gnu/packages/python.scm (python2-ttystatus)[arguments]: Replace 'check'
phase with custom function.
gnu: python2-cliapp: Enable tests.
* gnu/packages/python.scm (python2-cliapp)[arguments]: Replace 'check' phase
with custom function.
gnu: linux-libre: Update to 4.12.10.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.10.
(%linux-libre-hash): Update hash.
gnu: linux-libre@4.9: Update to 4.9.46.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.46.
gnu: linux-libre@4.4: Update to 4.4.85.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.85.
gnu: graphicsmagick: Fix CVE-2017-{13775,13776,13777}.
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patches.
* gnu/packages/patches/graphicsmagick-CVE-2017-13775.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-13776+CVE-2017-13777.patch:
New files.
* gnu/local.mk (dist_patch_DATA): Register them.
gnu: efl: Update to 1.20.3.
* gnu/packages/enlightenment.scm (efl): Update to 1.20.3.
gnu: Fix current-guix.
Without this change, I get errors like:
ERROR: In procedure string-drop:
ERROR: Value out of range 0 to 35: 51
* gnu/packages/package-management.scm (current-guix): Pass exactly the same
path to git-predicate and local-file, to ensure that the select? function is
compatible.