gnu: emacs-org-node: Update to 3.12.1.

* gnu/packages/emacs-xyz.scm (emacs-org-node): Update to 3.12.1.
[arguments]: Use G-Expressions.
<#:tests?>: Enable.
<#:test-command>: Update.
<#:phases>: Remove ’dont-git.
[native-inputs]: Add makem-minimal and sort.
[synopsis]: Apply style.

Merges guix/guix!5376

Change-Id: I879e6599f480fb687ff632ae65495cbe63d98801

import: elpa: Fix repo url for melpa git recipes.

* guix/import/elpa.scm (melpa-recipe->origin): Take repo location from
:url for `git' :fetcher.

Merges guix/guix!5631

Change-Id: I6a3a8cef52eda2e5c731b8ff7f38f17dc920e167
Signed-off-by: Cayetano Santos <csantosb@inventati.org>

gnu: Add emacs-agent-shell.

* gnu/packages/emacs-xyz.scm (emacs-agent-shell): New variable.

Change-Id: Ief6146dd475f11c7a67983174da945832b811deb
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>

gnu: Add emacs-acp.

* gnu/packages/emacs-xyz.scm (emacs-acp): New variable.

Change-Id: I392a5ac6a04b2a72c26ce674ee7877d4cf24d1de
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>

gnu: emacs-shell-maker: Update to 0.84.7.

* gnu/packages/emacs-xyz.scm (emacs-shell-maker): Update to 0.84.7.

Change-Id: Iaf46f46d116f3d771967f10712ccd17b40ff0a1e
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>

teams: Add cnx to team sysadmin.

* etc/teams.scm: Make cnx a member of team sysadmin.

Change-Id: Ifd707911ebfcfb550aee3d8e8d9ace27f5386a6e
Signed-off-by: Andreas Enge <andreas@enge.fr>

import: crate: Generate comments with ‘TODO REVIEW:’ prefix.

This distinguishes them from manually added ones.  When committing changes,
these ‘TODO REVIEW’ comments should be addressed and removed first.

If you're working with Rust packaging, please update your local Guix to this
commit to apply the change.

* guix/import/crate.scm (cargo-lock->expressions): Generate comments with
‘TODO REVIEW:’ prefix.
* tests/import/crate.scm ("crate-lockfile-import"): Don't check the exact
comment string.
* doc/guix-cookbook.texi (Common Workflow for Rust Packaging),
* gnu/packages/rust-crates.scm: Adjust accordingly.

Change-Id: I76b914b49be46d04cc61b101b6bc9e31cadb7f07
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
Merges: #4567

gnu: rust-crates: Add ‘package:’ prefix for replaced crates.

This avoids definitions like
‘(define rust-pipewire-0.8.0.fd3d8f7 rust-pipewire-0.8.0.fd3d8f7)’.

* gnu/packages/rust-crates.scm: Import (gnu packages rust-sources) module with
‘package:’ prefix.
* etc/teams/rust/rust-crates.tmpl,
* doc/guix-cookbook.texi (Cargo Workspaces and Development Snapshots): Adjust
accordingly.

Change-Id: Ie41556d8f30db65e968d8e8238491f1345eeed59
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: lc0: Update dependency on onednn.

* gnu/packages/lc0.scm (lc0)[inputs]: Remove oneapi-dnnl; add onednn.
[native-inputs]: Remove python; add python-minimal-wrapper.

Change-Id: Ie88bf234faf0acfba6b7d378392cb904e9d63536

gnu: ispc: Refresh package.

* gnu/packages/c.scm (ispc)[arguments]: Use G-Expressions; place inputs
after arguments.

Change-Id: I16bf07f559858d6bbbd99950bd591c2ecca40fcf

gnu: ispc: Update to 1.29.1.

* gnu/packages/c.scm (ispc): Update to 1.29.1.
[inputs]: Add onetbb.
[native-inputs]: Remove clang and python; add clang-19 and
python-minimal-wrapper.

Change-Id: I1d6b233b2d714e8cda67f5e95221b959de5863ac

gnu: qemu: Disable failing migration-test on AArch64.

On some AArch64 devices, like RPi5 or honeycombs used by CI, the test fails.

* gnu/packages/patches/qemu-disable-aarch64-migration-test.patch: New file.
* gnu/packages/virtualization.scm (qemu): Patch it.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: Ica2d31bc53e154637036c13517289c6c78010739
Fixes: #2447
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
Merges: #5683

teams: hpc: Adopt opencl.

* etc/teams.scm (hpc)<#:scope>: Add "gnu/packages/opencl.scm".
* CODEOWNERS: Regenerate file.

Change-Id: I6b0814ca131058e8608c969c777d4d0ca9c6b8ba

gnu: python-pytorch: Patch Python build.

* gnu/packages/machine-learning.scm (python-pytorch)[arguments]: Add phases
'patch-build-system to remove "__legacy__".

Change-Id: Ic2243bdb4539cca3a0a0ac955961feeec963c2e5

guix-install.sh: Make /etc/profile.d/zzz-guix.sh usable in set -u shells

* etc/guix-install.sh: Replace $INFOPATH, $MANPATH with ${V:-} variant.

Closes: guix/guix#4534
Change-Id: I82da28d1347b1f37862b903f1721d9bdbb78acd2
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
Merges: #4553

gnu: visionfive2: Update the module commentary.

* gnu/system/images/visionfive2.scm: Update the module commentary.

Change-Id: If3d12bb0e3ccb9eaced4eb1e3afe636c7b89896f
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
Merges: #4855

gnu: linux-libre 6.17-riscv: Enable CONFIG_SCSI_VIRTIO.

* gnu/packages/aux-files/linux-libre/6.17-riscv.conf: Enable
CONFIG_SCSI_VIRTIO.

Change-Id: I60920b484aa585e184f7f6174c334752a591d194
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: install-starfive-visionfive2-uEnv.txt: Set extra options.

* gnu/bootloader/u-boot.scm (install-starfive-visionfive2-uEnv.txt): Set
"boot_targets" and "bootcmd_mmc1".

Change-Id: I0ce157d66e792af605cfdb7cc5dbecf6e5171c5a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: make-u-boot-installer: Use the original file name.

* gnu/bootloader/u-boot.scm (make-u-boot-installer): Use the original file
name without the Guix store file prefix when installing a plain file.

Change-Id: Ica2707878c1dd5f7d3b805499a0a38ca76e315af
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: install-starfive-visionfive2-uEnv.txt: Remove "~%".

* gnu/bootloader/u-boot.scm (install-starfive-visionfive2-uEnv.txt): Remove
an extra "~%" from the file contents.

Change-Id: Ie83ae01702538153017e45da51ce2c3000df7899
Signed-off-by: Rutherther <rutherther@ditigal.xyz>