gnu: glade: Update to 3.18.5.
* gnu/packages/gnome.scm (glade): Update to 3.18.5.
[arguments]: Disable tests; add "fix-docbook" phase.
[inputs]: Replace "gtk+-2" with "gtk+".
[native-inputs]: Add "itstool", "libxslt", "docbook-xml", "docbook-xsl";
replace "python" with "python-2".
gnu: openssh: Update to 7.1p2.
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778].
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
gnu: Add docker-compose.
* gnu/packages/docker.scm (docker-compose): New variable.
gnu: Add python-dockerpty.
* gnu/packages/docker.scm (python-dockerpty): New variable.
gnu: Add python-docker-py.
* gnu/packages/docker.scm: New file.
* Makefile.am (GNU_SYSTEM_MODULES): Add it.
gnu: Add python-websocket-client.
* gnu/packages/python.scm (python-websocket-client): New variable.
gnu: Add python-texttable.
* gnu/packages/python.scm (python-texttable, python2-texttable): New
variables.
gnu: Update python-jsonschema to 2.5.1.
* gnu/packages/python.scm (python-jsonschema): Update to 2.5.1.
[inputs]: Add python-vcversioner.
gnu: Add python-vcversioner.
* gnu/packages/python.scm (python-vcversioner, python2-vcversioner): New
variables.
gnu: Add version 2.7 variant of python-requests.
* gnu/packages/python.scm (python-requests-2.7): New variable.
gnu: r-go-db: Add missing input.
* gnu/packages/bioinformatics.scm (r-go-db)[propagated-inputs]: Add
"r-annotationdbi".
gnu: r-sparsem: Add missing "gfortran" input.
* gnu/packages/statistics.scm (r-sparsem)[inputs]: Add "gfortran".
gnu: bowtie: Update to 2.2.6.
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6.
[source]: Remove patch; do not set CC and CPP variables.
[inputs]: Add "tbb".
[arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom
"install" phase.
* gnu/packages/patches/bowtie-fix-makefile.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch file.
gnu: gnupg: Add TOFU support.
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add sqlite.
import: gem: Beautify description field.
* guix/import/gem.scm (gem->guix-package): Use 'beautify-description'.
import: cran: Move beautify-description to utils module.
* guix/import/cran.scm (beautify-description): Move from here...
* guix/import/utils.scm: ... to here.
emacs: Fix heading face in "Package Info".
Reported by Ludovic Courtès <ludo@gnu.org> on #guix.
This fixes a regression introduced in commit 7171d824.
'insert-text-button' procedure does not allow to override a button face,
so a specialized button type should be used instead.
* emacs/guix-ui-package.el (guix-package-heading): New button type.
(guix-package-info-insert-heading): Use it.
gnu: orfm: Update to 0.5.3.
* gnu/packages/bioinformatics.scm (orfm): Update to 0.5.3.
[native-inputs]: Add inputs required for tests.
[description]: Add commas.