gnu: Add python-pygit2-1.18.

* gnu/packages/python-xyz.scm (python-pygit2-1.18): New variable.

Change-Id: Iad3a430d544be2c56bb27ea416adef161b5b3e94

gnu: Add python-dulwich-0.24.

* gnu/packages/python-xyz.scm (python-dulwich-0.24): New variable.

Change-Id: I711dbb2595fa6674b3f2e3ac029ed437d3480423

gnu: Add python-dvc-data.

* gnu/packages/python-science.scm (python-dvc-data): New variable.

Change-Id: I4479129a1842d2133acec6f7aeb1d4a95e9e6162

gnu: Add python-dvc-objects.

* gnu/packages/python-science.scm (python-dvc-objects): New variable.

Change-Id: Ibd4247ab12b161392de7d351195646f7215610bd

gnu: Add python-sqltrie.

* gnu/packages/python-xyz.scm (python-sqltrie): New variable.

Change-Id: Idb11ca5d9e94c90957046e0797b4e3b7147710b5

gnu: Add python-funcy-1.14.

* gnu/packages/python-xyz.scm (python-funcy-1.14): New variable.

Change-Id: I2915e5c4b848db9023b2f27f969d493291773bea

gnu: Add python-snakemake-executor-plugin-slurm.

* gnu/packages/python-science.scm (python-snakemake-executor-plugin-slurm):
New variable.

Change-Id: I7ca462dc224dc6947130fa9842f26c25cd7349a4

gnu: Add python-snakemake-executor-plugin-slurm-jobstep.

* gnu/packages/python-science.scm
(python-snakemake-executor-plugin-slurm-jobstep): New variable.

Change-Id: I477b8a30ae6642fa0e8d6e49a828ab0d3aa589b4

gnu: Add pax-utils.

* gnu/packages/elf.scm (pax-utils): New variable.

Change-Id: If4978a63b3a654f1a93dcc901f153161df71692f

gnu: Add poke-elf.

* gnu/packages/engineering.scm (poke-elf): New variable.

Change-Id: If3c462a626e0fdd09adbc6635a04e08a98f0ef33

gnu: poke: Add a search path for POKE_LOAD_PATH.

* gnu/packages/engineering.scm (poke) [native-search-paths]: New field.

Change-Id: I0ae8833b0e01363e9c87b83c3ed0ff8bcd4296fe

gnu: python-shshsh: Remove development inputs.

* gnu/packages/python-xyz.scm (python-shshsh):
[native-inputs]: Remove python-tox.

Change-Id: I51632fe53e51ea7852b9a37ea8e287a5531b4510

gnu: python-pytest-qt: Remove development inputs.

* gnu/packages/python-check.scm (python-pytest-qt):
[native-inputs]: Remove python-tox.

Change-Id: I98474f6c76b0df89b7c45a7c2b9bdebf9ac72b77

gnu: python-omnipath: Update to 1.0.10.

* gnu/packages/python-web.scm (python-omnipath): Update to 1.0.10. Style package.
[arguments][test-flags]: Enable now passing test.
[arguments][phase]: Remove custom phase pretend-version.
[native-inputs]: Remove python-setuptools, python-setuptools-scm, python-tox, and
python-wheel; add python-hatchling.

Change-Id: Ia209644349a18ceabb37b9c3c557288a627f6aa7

gnu: python-nox: Remove development inputs.

* gnu/packages/python-check.scm (python-nox):
[native-inputs]: Remove python-tox.

Change-Id: I650e4255ffcd330c6209e100902cff0604b450ea

Revert "gnu: python-nox: Update to 2025.10.16."

This reverts commit c8bcee5741a57931c08c8607bcc2f8b886d25420.

Change-Id: I57a32e27dc72caeccf454d67413630301aa06a5b

gnu: python-pybadges: Remove development inputs.

* gnu/packages/python-web.scm (python-pybadges):
[native-inputs]: Remove python-nox.

Change-Id: I3051aed8c3b4fcf1816897ae61a922b00130f9a5

gnu: emacs-jedi: Remove development inputs.

* gnu/packages/emacs-xyz.scm (emacs-jedi):
[native-inputs]: Remove python-tox.

Change-Id: Id73daf81ace4a904f72c0fc1064a182e8b3faf53

gnu: python-scikit-misc: Remove development inputs.

* gnu/packages/python-science.scm (python-scikit-misc):
[arguments][phases][fix-pytest-config]: New phase.
[propagated-inputs]: Remove python-twine.
[native-inputs]: Remove python-pytest-cov.

Change-Id: I4f52ff2819775d65fd205f6222c8fba854161580

gnu: python-pyahocorasick: Update to 2.2.0.

* gnu/packages/bioinformatics.scm (python-pyahocorasick): Update to 2.2.0.
[native-inputs]: Remove python-twine and python-wheel.

Change-Id: If9901abaae4f52a795d1b9b84f06a3b8cc6fc235

gnu: python-ngesh: Remove development inputs.

* gnu/packages/bioinformatics.scm (python-ngesh): [native-inputs]: Remove
python-black, python-flake8, python-twine, and python-wheel.

Change-Id: Ie401b481f768774732fdf021e52530af644856c7