gnu: python-scikit-image: Update to 0.22.0.

* gnu/packages/python-science.scm (python-scikit-image): Update to 0.22.0.
[source]: Fetch from git repository.
[build-system]: Use pyproject-build-system.
[arguments]: Use G-expression; remove custom 'build phase; simplify 'check
phase; enable all tests.
[propagated-inputs]: Add python-lazy-loader.
[native-inputs]: Add meson-python, python-numpydoc, python-packaging, and
python-wheel.

Change-Id: I00ede026a7941eae36157106f753a21fb64099c3

gnu: python-imageio: Update to 2.33.1.

* gnu/packages/python-xyz.scm (python-imageio): Update to 2.33.1.
[propagated-inputs]: Remove python-psutil; add python-tifffile.
[native-inputs]: Add python-black, python-flake8, python-fsspec, and
python-pytest-cov.

Change-Id: I5c64d939f5ee94ac9ec8fdbd7b51cd978b7df0fb

gnu: python-lazy-loader: Update to 0.3.

* gnu/packages/python-xyz.scm (python-lazy-loader): Update to 0.3.
[native-inputs]: Add python-pre-commit.

Change-Id: Id4f8b61e6e60dd6da04beb8c1e4d064dc34d994c

gnu: python-tifffile: Update to 2023.12.9.

* gnu/packages/python-xyz.scm (python-tifffile): Update to 2023.12.9.
[propagated-inputs]: Remove python-imagecodecs.
[native-inputs]: Add python-pytest.

Change-Id: I2567bef390e286ed4399cc67b80a9df503f53c0a

gnu: python-scipy: Update to 1.11.4.

* gnu/packages/python-science.scm (python-scipy): Update to 1.11.4.
[arguments]: Use mesonpy backend.
[inputs]: Replace pybind11 with pybind11-2.10.
[native-inputs]: Add python-click, python-doit, python-pooch, and
python-pydevtool; replace python-cython with python-cython-0.29.35.

Change-Id: I4b26e1b6382899bba24f84461f154e97765e08f5

gnu: meson-python: Update to 0.15.0.

* gnu/packages/build-tools.scm (meson-python): Update to 0.15.0.
[arguments]: Add phase 'delete-directory.
[propagated-inputs]: Add python-cython, python-pyproject-metadata-0.7, and
python-typing-extensions.
[native-inputs]: Add python-pytest-cov.

Change-Id: I412af929c9e0485aa2a15e316d247f58e6f3477b

gnu: Add python-pydevtool.

* gnu/packages/python-xyz.scm (python-pydevtool): New variable.

Change-Id: I325b81fa6421094a5a64084c06e66b8fa136e270

gnu: Add python-pyproject-metadata-0.7.

* gnu/packages/python-xyz.scm (python-pyproject-metadata-0.7): New variable.

Change-Id: I7c47c911fa2a33c0b5711b0009f31b3e32c1c1d7

gnu: python-doit: Update to 0.36.0.

* gnu/packages/python-xyz.scm (python-doit): Update to 0.36.0.
[build-system]: Use pyproject-build-system.
[arguments]: Disable test_execute test.
[propagated-inputs]: Remove python-pyinotify; add python-importlib-metadata.
[description]: Add missing spaces between two sentences.

Change-Id: I1d046201c9bef63477f8fb0a2f8494bffbbbc711

gnu: Add pybind11-2.10.

* gnu/packages/python-xyz.scm (pybind11-2.10): New variable.

Change-Id: Ia7915af3baca36b0677d3f762046585abc473f56

gnu: Add python-cython-0.29.35.

* gnu/packages/python-xyz.scm (python-cython-0.29.35): New variable.

Change-Id: I09ec851a2051e885f6417524bbeeb81b743bef0b

gnu: Add python-pydoc-markdown.

* gnu/packages/python-xyz.scm (python-pydoc-markdown): New variable.

Change-Id: I03e45c2b87f626f7a8113d785c72c14a301d79be

gnu: python-yapf: Update to 0.32.0.

* gnu/packages/python-xyz.scm (python-yapf): Update to 0.32.0.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-pytest.
[propagated-inputs]: Add python-importlib-metadata, python-platformdirs, and
python-tomli.

Change-Id: I30fa0b9d643f6585624da87d5c1a1edbb59425c4

gnu: Add python-docspec-python.

* gnu/packages/python-xyz.scm (python-docspec-python): New variable.

Change-Id: Ic607d0a34a8601dd464251edd8c8509314b7489c

gnu: Add python-nr-util.

* gnu/packages/python-xyz.scm (python-nr-util): New variable.

Change-Id: I26dda5e5bc03334fb476e3f1fd2fa6aaf93a91c3

gnu: go-github-com-arceliar-ironwood: Update to v0.0.0-20231127131626-465b82dfb5bd.

* gnu/packages/golang.scm (go-github-com-arceliar-ironwood): Update to
  v0.0.0-20231127131626-465b82dfb5bd.

Change-Id: Ia94d7c88e54d33f7bb7b5054a757d7ef203d47c2
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: yggdrasil: Update to 0.5.4.

* gnu/packages/networking.scm (yggdrasil): Update to 0.5.4.

Change-Id: I4f386e1b69627b0c5a6095c42274b8a8bff8bfd9
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: hypercorn: Reformat with guix style.

* gnu/packages/python-web.scm (hypercorn): Reformat with guix style.

gnu: hypercorn: Adjust inputs.

* gnu/packages/python-web.scm (hypercorn)[propagated-inputs]: Add
python-exceptiongroup and python-tomli. Remove python-toml and
python-typing-extensions.
[native-inputs]: Remove python-mock.

gnu: Remove python-tslearn.

This package now lives in the guix-science channel.

* gnu/packages/machine-learning.scm (python-tslearn): Remove variable.

Change-Id: I655df3417d258cb1231746626817fde9628e9569