gnu: python-androguard: Update to 3.3.5.
* gnu/packages/android.scm (python-androguard): Update to 3.3.5.
[propagated-inputs]: Add python-click and python-pydot.
Change-Id: I5bb7ec8566b3d27db1f8cbc1b7adb4d8201250d2
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
gnu: python-pytooling: Update to 8.7.6.
* gnu/packages/python-xyz.scm (python-pytooling): Update to 8.7.6.
[native-inputs]: Remove python-wheel.
Change-Id: I371c4b3419c7076c0b35d3ce9f437959da912ecf
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
gnu: Add python-sshfs.
* gnu/packages/python-xyz.scm (python-sshfs): New variable.
Change-Id: I22ea5d608f8b02d584dd2d8318d2142e898e629f
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
gnu: Add python-mock-ssh-server.
* gnu/packages/python-xyz.scm (python-mock-ssh-server): New variable.
Change-Id: Id5ab44d812fb6e0d8758961e81e4659e7c215823
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
gnu: idr: Switch to pyproject.
* gnu/packages/bioinformatics.scm (idr)[build-system]: Switch to
pyproject-build-system.
[native-inputs]: Add python-setuptools.
Change-Id: Ib6811a399b4c531f119bcef23b3216ff70c2d5eb
gnu: python-deeptoolsintervals: Switch to pyproject.
* gnu/packages/bioinformatics.scm (python-deeptoolsintervals):
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-pytest and python-setuptools.
Change-Id: I2f95aa4f526f879d9407d7625834f389e384bc39
gnu: python-twobitreader: Update to 3.1.9.
* gnu/packages/bioinformatics.scm (python-twobitreader): Update to 3.1.9.
[build-system]: Switch to pyproject-build-system.
[arguments] <tests?>: Enable.
[native-inputs]: Remove python-sphinx; add python-pytest and
python-setuptools.
Change-Id: I1c8d450611f1a3f3d271606bb744dd24c5f60d4d
gnu: bwa-meth: Update to 0.2.9.
* gnu/packages/bioinformatics.scm (bwa-meth): Update to 0.2.9.
[build-system]: Switch to pyproject-build-system.
[arguments] <tests?>: No tests.
[inputs]: Add python-toolshed.
[native-inputs]: Remove python-toolshed; add python-setuptools.
Change-Id: Ib3544054943af904f4acea0a899f86ef66e7a47d
gnu: python-fastalite: Update to 0.4.1.
* gnu/packages/bioinformatics.scm (python-fastalite): Update to 0.4.1.
[source]: Switch to git-fetch providing test data.
[build-system]: Switch to pyproject-build-system.
[arguments] <tests?>: Enable.
<test-backend>: Use 'unittest.
<phases>: Add set-version.
[native-inputs]: Add python-setuptools.
Change-Id: Ie6659208edb37995303cf332e3b985a89d5e8d39
gnu: python-cmseq: Fix build.
* gnu/packages/bioinformatics.scm (python-bcbio-gff/biopython-1.73):
Rename variable to python-bcbio-gff-for-python-cmseq and pin to 0.6.9
version which is the last one compatible with python-biopython-1.73.
(python-cmseq)[propagated-inputs]: Remove
python-bcbio-gff/biopython-1.73; add python-bcbio-gff-for-python-cmseq.
[native-inputs]: Add python-setuptools.
Change-Id: Id7c37f8f34058648506645ce07c2a89dfcea2067
gnu: python-ega-download-client: Update to 5.2.1.
* gnu/packages/bioinformatics.scm (python-ega-download-client): Update to 5.2.1.
[arguments]: Use G-Expressions.
<test-flags>: Rework skipped tests and ignored tests files
generating very larg test files (up to 150GiB) which may affect the CI
or user's machine.
[native-inputs]: Remove python-coverage and python-wheel; add
nss-certs-for-test.
Change-Id: Ic91c65e548e27d6c57396000233b6e5f5949554c