describe: Try harder to find the ‘guix pull’ profile. Fixes <https://issues.guix.gnu.org/66705>. The strategy used by ‘current-profile’ so far would fail to find the right profile (the one created by ‘guix pull’ or ‘guix time-machine’) in cases where said profile is itself included in another profile. This happens, for instance, when running ‘guix shell -CW -- guix describe’, which, as a result, would display nothing but the ‘guix’ channel. This patch fixes that by having ‘current-profile’ not just check for the presence of a ‘manifest’ file but also parse it to determine whether it’s a ‘guix pull’ kind of manifest. * guix/describe.scm (find-profile): New procedure. (current-profile): Adjust to use it. Change-Id: I9194f54ce1496a6591e247c76203f497f28c330b
profiles: ‘read-manifest’ raises to ‘&profile-error’ upon version mismatch. * guix/profiles.scm (sexp->manifest): In the catch-all clause, raise to ‘&profile-error’ in addition to ‘&message’. Change-Id: Ieb08187b388531c2157bfe67fb1b7319dbbb4ff3
gnu: icecat: Update to 115.9.0-guix0-preview1 [security fixes]. Includes fixes for CVE-2023-5388, CVE-2024-0743, CVE-2024-2605, CVE-2024-2607, CVE-2024-2608, CVE-2024-2610, CVE-2024-2611, CVE-2024-2612, CVE-2024-2614, and CVE-2024-2616. * gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes.
gnu: snakemake-7: Patch tibanna command line. * gnu/packages/python-xyz.scm (snakemake-7)[arguments]: Remove store reference in tibanna command line. Change-Id: I339f4c3133a0e687723a53277818749a8e5fc97a
gnu: r-hmisc: Update to 5.1-2. * gnu/packages/statistics.scm (r-hmisc): Update to 5.1-2. Change-Id: I6b6ab9916f58323f0bc523e3c8ff0a22e59d63b5
gnu: r-tidyselect: Update to 1.2.1. * gnu/packages/statistics.scm (r-tidyselect): Update to 1.2.1. Change-Id: Id5cddcbd6180070c16651634eff8cd9c4839c104
gnu: r-digest: Update to 0.6.35. * gnu/packages/statistics.scm (r-digest): Update to 0.6.35. Change-Id: I054d6daa5b056241547411e83a30a7d1e7afd2d1
gnu: r-ragg: Update to 1.3.0. * gnu/packages/cran.scm (r-ragg): Update to 1.3.0. Change-Id: I3e44fe7dab732944082223cbde4f6cbd2800714f
gnu: r-mlr3learners: Update to 0.6.0. * gnu/packages/cran.scm (r-mlr3learners): Update to 0.6.0. Change-Id: Iac86172bfc5d3d3b719ccacb4b87c120ce2cc596
gnu: r-seurat: Update to 5.0.3. * gnu/packages/cran.scm (r-seurat): Update to 5.0.3. Change-Id: Id86830ab2ce8122989bf88149fb9d733b8a458fa
gnu: r-erm: Update to 1.0-6. * gnu/packages/cran.scm (r-erm): Update to 1.0-6. Change-Id: I2bfd514d63ee0ae873d4368f7fb2ba9798998cd5
gnu: r-gamlss-data: Update to 6.0-6. * gnu/packages/cran.scm (r-gamlss-data): Update to 6.0-6. Change-Id: I6bb7a4ae35b7c83d132979a6024d4cedabe97eb3
gnu: r-parameters: Update to 0.21.6. * gnu/packages/cran.scm (r-parameters): Update to 0.21.6. Change-Id: Ie0c10257117909ca246eb01b9a15b94adbf6d85c
gnu: r-rms: Update to 6.8-0. * gnu/packages/cran.scm (r-rms): Update to 6.8-0. Change-Id: If854e5151f3821f6a4c660e268ebd4ff063521dd
gnu: r-bigrquery: Update to 1.5.1. * gnu/packages/cran.scm (r-bigrquery): Update to 1.5.1. Change-Id: I6aca258386093f1eb6fed5b6501b28b26d05b31f
gnu: r-tm: Update to 0.7-12. * gnu/packages/cran.scm (r-tm): Update to 0.7-12. Change-Id: Ie148245220ef5ea28d118696b92078dd7a84dd3e
gnu: r-remotes: Update to 2.5.0. * gnu/packages/cran.scm (r-remotes): Update to 2.5.0. Change-Id: Ie68b8b2a04fb6d2b0d2d15936e25e7d026a8d1b6
gnu: r-targets: Update to 1.6.0. * gnu/packages/cran.scm (r-targets): Update to 1.6.0. Change-Id: I4e72c19c1aa0c9486f5b495e60e969f043a6936e
gnu: r-tarchetypes: Update to 0.8.0. * gnu/packages/cran.scm (r-tarchetypes): Update to 0.8.0. Change-Id: I934c092307515bb316c0265bc9145ec9b6a15e4d
gnu: r-wrs2: Update to 1.1-6. * gnu/packages/cran.scm (r-wrs2): Update to 1.1-6. Change-Id: If0f280067722cddf1dd3024076a4e19faeea652b