gnu: icecat: Apply fixes for CVE-2015-{0801,0807,0815,0816}.
Actually, CVE-2015-0801 and CVE-2015-0816 were already patched in
4c153a9125fa0913077b06b5ed537958ae4ca163, but the corresponding CVEs
were not yet announced.
* gnu/packages/patches/icecat-bug-1146339.patch: Rename to ...
* gnu/packages/patches/icecat-CVE-2015-0801.patch: ... this.
* gnu/packages/patches/icecat-bug-1144991.patch: Rename to ...
* gnu/packages/patches/icecat-CVE-2015-0816.patch: ... this.
* gnu/packages/patches/icecat-CVE-2015-0807.patch,
gnu/packages/patches/icecat-CVE-2015-0815-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-0815-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-0815-pt3.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them, and adapt to renamed files.
* gnu/packages/gnuzilla.scm (icecat): Add patches, and adapt to renamed files.
gnu: linux-libre: Update to 3.19.3.
The changes to linux-libre-*.conf are by Jason Self <j@jxself.org>.
* gnu/packages/patches/linux-libre-libreboot-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre): Update to version 3.19.3.
Add patch.
* gnu/packages/linux-libre-i686.conf,
gnu/packages/linux-libre-x86_64.conf: Update for 3.19.x.
Co-Authored-By: Jason Self <j@jxself.org>
services: syslog-service: Add 'config-file' argument.
* gnu/services/base.scm (syslog-service): Add 'config-file' keyword
argument.
* doc/guix.texi (Base Services): Document it.
gnu: Add clustal omega.
* gnu/packages/bioinformatics.scm (clustal-omega): New variable.
gnu: Add argtable.
* gnu/packages/popt.scm (argtable): New variable.
gnu: pulseaudio: Increase timeout on cpu-mix-test.
* gnu/packages/patches/pulseaudio-longer-test-timeout.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/pulseaudio.scm (pulseaudio)[source]: Add patch.
Add (guix build gremlin).
* guix/build/gremlin.scm, tests/gremlin.scm: New files.
* Makefile.am (MODULES): Add guix/build/gremlin.scm.
(SCM_TESTS): Add tests/gremlin.scm.
tests: Fix module name for 'lint'.
* tests/lint.scm: Change module name to 'test-lint'.
gnu: xterm: Update to 317.
* gnu/packages/xorg.scm (xterm): Update to 317.
gnu: pbtranscript-tofu: Add missing inputs.
* gnu/packages/bioinformatics.scm (pbtranscript-tofu)[inputs]: Add missing
runtime inputs.
gnu: pbtranscript-tofu: Delete pre-built libraries.
* gnu/packages/bioinformatics.scm (pbtranscript-tofu)[arguments]: Delete
"build" directory and any shared objects after unpacking.
gnu: Add python-networkx.
* gnu/packages/python.scm (python-networkx, python2-networkx): New variables.
gnu: Add python-decorator.
* gnu/packages/python.scm (python-decorator, python2-decorator): New
variables.
gnu: Add vcftools.
* gnu/packages/bioinformatics.scm (vcftools): New variable.
gnu: Add cutadapt.
* gnu/packages/bioinformatics.scm (cutadapt): New variable.
gnu: ngircd: Fix test suite.
* gnu/packages/messaging.scm (ngircd): Overwrite getpid.sh with a more
reliable version.
install: Create /var/tmp.
Suggested by Mark H Weaver <mhw@netris.org>.
* gnu/build/install.scm (directives): Add /var/tmp.
gnu: Add missing copyright line.
* gnu/packages/graphics.scm: Add copyright line for 87bafa0.
elf: Add missing argument in 'elf-segment'.
* guix/elf.scm (elf-segment): Add missing argument N.