gnu: beets: Move propagated-inputs to inputs. * gnu/packages/music.scm (beets)[propagated-inputs]: Replace with ... [inputs]: ... new field.
gnu: beets: Update to 1.3.18. * gnu/packages/patches/beets-image-test-failure.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/music.scm (beets): Update to 1.3.18. [source]: Use patch.
gnu: vsearch: Update to 0.11.2. * gnu/packages/bioinformatics.scm (vsearch): Update to 0.11.2.
gnu: nasm: Make build bit-reproducible. * gnu/packages/patches/nasm-no-ps-pdf.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/assembly.scm (nasm): Use it. Remove ghostscript, do not build PS or PDF docs. Makes build bit-reproducible. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
hydra: Fix the construction of system test jobs. * build-aux/hydra/gnu-system.scm (system-test-jobs)[test->thunk]: New procedure. [->job]: Use it.
hydra: 'evaluate' now validates job alists. * build-aux/hydra/evaluate.scm (assert-valid-job): New procedure. <top level>: Use it.
gnu: Add ruby-puma. gnu/packages/ruby.scm (ruby-puma): New variable. gnu/packages/patches/ruby-puma-ignore-broken-test.patch: New file. gnu/local.mk (dist_patch_DATA): Add it.
gnu: Add ruby-hoe-git. * gnu/packages/ruby.scm (ruby-hoe-git): New variable.
gnu: Add r-vegan. * gnu/packages/bioinformatics.scm (r-vegan): New variable.
gnu: Add r-mgcv. * gnu/packages/statistics.scm (r-mgcv): New variable.
gnu: Add r-permute. * gnu/packages/statistics.scm (r-permute): New variable.
gnu: texlive: Update to 2016. * gnu/packages/tex.scm (texlive-extra-src, texlive-texmf-src, texlive-bin, texlive-texmf, texlive): Update to 2016. (texlive-texmf)[properies]: Add max-silent-time so grafts don't time out.
gnu: Adjust to yasm change of module. This is a followup to 15a3fffc593a2385bbac60913909833babc1625f. * gnu/packages/gnuzilla.scm, gnu/packages/gstreamer.scm, gnu/packages/kodi.scm, gnu/packages/video.scm: Adjust import list to yasm move.
gnu: yasm: Move to (gnu packages assembly). * gnu/packages/yasm.scm: Remove. Move 'yasm' to... * gnu/packages/assembly.scm (yasm): ... here. New variable. * gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
gnu: Add nasm. * gnu/packages/assembly.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
install: Pass a relative file name to 'local-file'. This is a followup to cbbbb7be0fbaa11ff75bce92f2d82131ff8db104. * gnu/system/install.scm (/etc/configuration-files): Pass a relative file name to 'local-file'.
gnu: diamond: Update to 0.8.7. * gnu/packages/bioinformatics.scm (diamond): Update to 0.8.7.
gnu: Update american-fuzzy-lop to 2.15b. * gnu/packages/debug.scm (american-fuzzy-lop): Update to 2.15b.
gnu: Add thefuck. * gnu/packages/admin.scm (thefuck): New variable.
gnu: shotwell: Update to 0.23.1. Addresses DWF-2016-89001: validate TLS certificates. * gnu/packages/gnome.scm (shotwell): Update to 0.23.1. [inputs]: replace webkitgtk-2.4 with webkitgtk.