gnu: libomp-8: Inherit from libomp-12.

This is the highest version for which the derivation does not change.

* gnu/packages/llvm.scm (libomp-8)[inherit, native-inputs]: Replace
libomp-9 by libomp-12.

Change-Id: I8fc0386a42ca04d67dd5890207847cf17454ab50

gnu: Remove clang-toolchain-9.

* gnu/packages/llvm.scm (clang-toolchain-9): Delete variable.

Change-Id: Ia8ee92ef8bf3986077216f19f7feee04360ad09e

gnu: Remove argtable.

* gnu/packages/popt.scm (argtable): Delete variable.

Fixes: guix/guix#1343
Change-Id: I07a02f59ea41b67b4e9e7b904697cae4a9a9300d

gnu: Remove clustal-omega.

Does not build due to failing input argtable@2. No release since 2018.

* gnu/packages/bioinformatics.scm (clustal-omega): Delete variable.

Change-Id: I28d6ce8e44419a4e07dec8a44b23be13af3ca82e

gnu: borgmatic: Update to 2.0.7.

* gnu/packages/backup.scm (borgmatic): Update to 2.0.7.
[inputs]: Remove python-colorama.

Change-Id: I236753e33f21bc8f04e3dad5e4248ba2c4c04398
Signed-off-by: Andreas Enge <andreas@enge.fr>

gnu: diffutils: Skip some tests on all powerpc architectures.

This is a follow-up to e3fbaeee1386fd447f40ffdf53d964d1f8541d49.

* gnu/packages/base.scm (diffutils)[arguments]: When building for any
powerpc architecture add make-flags to mark 2 tests as failed.

Change-Id: Iceea5bbb045b10f704da4783abd8bf244941e793

gnu: icecat: Update to 128.14.0-gnu1 [security fixes].

Includes fixes for MFSA-RESERVE-2025-2 (Memory safety bugs),
MFSA-RESERVE-2025-1977130 (Uninitialized memory in the JavaScript
Engine component), MFSA-RESERVE-2025-1979527 (Sandbox escape due to
invalid pointer in the Audio/Video: GMP component), and
MFSA-RESERVE-2025-1979782 (Same-origin policy bypass in the Graphics:
Canvas2D component).

* gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update.
(icecat-source): Update 'gnuzilla-commit' and hashes.

gnu: onnx-optimizer: Reduce closure size.

* gnu/packages/machine-learning.scm (onnx-optimizer) [native-inputs]:
Remove python-pytest-runner, python-coverage, python-setuptools and
python-wheel; add python-setuptools-next.

Change-Id: I713ff521ff3f329733810cb4d80a16684fddc236

gnu: onnx-optimizer: Switch to pyproject.

* gnu/packages/machine-learning.scm (onnx-optimizer): Switch to
pyproject.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools, python-wheel.

Change-Id: Idca467e74209bfe058cf9070412769916a11e68c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: asymptote: Update to 3.05.

* gnu/packages/plotutils.scm (asymptote): Update to 3.05.
[native-inputs]: Add texlive-dvisvgm.

Change-Id: I81bcef820221ed04f2ef94a00175f98ca8a43cb7
Signed-off-by: jgart <jgart@dismail.de>

gnu: Remove bitcoin-unlimited.

* gnu/packages/finance.scm (bitcoin-unlimited): Delete variable.

Fixes: guix/guix#1383
Change-Id: Ic72b4df0ee227b11d7252a5e9534b2ff81212169

gnu: lighttpd: Update to 1.4.81.

* gnu/packages/web.scm (lighttpd): Update to 1.4.81.

Change-Id: Ie308f7d4ef27a2aa320a26b7a7c12f7b4fb4130f
Signed-off-by: Andreas Enge <andreas@enge.fr>

gnu: m2-planet: Update to 1.12.0.

* gnu/packages/mes.scm (m2-planet): Update to 1.12.0.

Change-Id: I79c67e42bb1e055c6d6804eb18115a03f94f056f

gnu: mescc-tools: Update to 1.7.0.

* gnu/packages/mes.scm (mescc-tools): Update to 1.7.0.

Change-Id: I79c67e42bb1e055c6d6804eb18115a03f94f056f

gnu: mes: Use nyacc-2.02.2.

* gnu/packages/mes.scm (mes)[propagated-inputs]: Use nyacc (2.02.2).

Change-Id: I79c67e42bb1e055c6d6804eb18115a03f94f056f

gnu: nyacc: Update to 2.02.2.

We don't want to touch the packages leading up to nyacc-1.00.2 which is used
in commencement.

* gnu/packages/mes.scm (nyacc): Rename to...
(nyacc-1.08.1): ...this.
(nyacc-1.00.2): Update accordingly.
(nyacc): New variable.

Change-Id: I0d8ac098ae6871e6ebcff2090537e26e759c4d9b

gnu: mes: Update to 0.27.1; fixes build with gcc-14.

* gnu/packages/mes.scm (mes): Update to 0.27.1.

Change-Id: Ic77caa0e8ca9cd6b8f97a711c7cff147a68d26c4

gnu: komikku: Fix typo in patch.

This is a follow-up to d3f91786b9fbba9b85ee2ba4aa0efe747ed3d50e, which
introduced a patch to restore backwards compatibility with Python 3.11.

* gnu/packages/patches/komikku-python-3.11-compat.patch: Add missing '{' in
replacement.

gnu: trealla: Update to 2.82.14.

* gnu/packages/prolog.scm (trealla): Update to 2.82.14.

Change-Id: I2bb8d5f7580935a3f3b960b7e5631456177307bc

gnu: nss-rapid: Fix source build.

This is a follow-up to 4918534be1ffc1896a59e2fb69a9eaaa3140a0b8.

* gnu/packages/nss.scm (nss-rapid) [source] <patches>: Correct argument order
for ‘string-suffix?’.

Change-Id: I2c0a79893846faf68d8348e9eb70fd981a3547e6