gnu: python-regions: Simplify package.

* gnu/packages/astronomy.scm (python-regions) [arguments] <phases>:
Remove 'create-setup.py, 'writable-compiler and build-extensions. Use
custom 'check.

Change-Id: I75ff85cc115e41eb7affd86c10eeea363ded3882

gnu: python-cartopy: Update to 0.24.1.

* gnu/packages/geo.scm (python-cartopy): Update to 0.24.1.
[source] <uri>: Adjust it as PyPI archive name has been changed.
[arguments] <test-flags>: Preserve the most of the tests as they passed
successfully or removed in upstream.  Utilize python-pytest-xdist by
providing "--numprocesses" option.
[propagated-inputs]: Add python-fiona, python-owslib, python-pillow, and
python-pykdtree.
[native-inputs]: Remove python-coveralls and python-pytest-cov. Add
python-setuptools-scm.

Change-Id: I91b82cfe50f569923b782162e447b11cdee45ff0

gnu: r-presto: Update to 1.0.0-1.7636b3d.

* gnu/packages/bioinformatics.scm (r-presto): Update to 1.0.0-1.7636b3d.
[properties]: Fix typo.
[propagated-inputs]: Remove r-deseq2 and r-reshape2; add r-purrr and r-tibble.
[native-inputs]: Add r-knitr.

Change-Id: I1285062405bd42b7f3162a44ccf7b174492e5201

gnu: greetd: Refer to the correct bash.

This fixes https://issues.guix.gnu.org/76105.

* gnu/packages/admin.scm (greetd)[inputs]: Add bash.

Reported-by: Felix Lechner <felix.lechner@lease-up.com>
Change-Id: I8d7874dda2d20607e5a802ac971b6478f0aea638

gnu: Remove rust-sequoia-gpg-agent-0.4.

* gnu/packages/sequoia.scm (rust-sequoia-gpg-agent-0.4): Delete variable.

Change-Id: I8f9ef51c7837b02d20a8d5769128a2188a3dc8ef

gnu: Remove rust-sequoia-net-0.28.

* gnu/packages/sequoia.scm (rust-sequoia-net-0.28): Delete variable.

Change-Id: Ia4c59be2f605ccd5b7f1ca9cce955c8c6519da85

gnu: sequoia-chameleon-gnupg: Update to 0.12.0.

* gnu/packages/sequoia.scm (sequoia-chameleon-gnupg): Update to 0.12.0.
[source]: Remove snippet.
[arguments]: Remove a skipped test from the cargo-test-flags.
[cargo-inputs]: Replace rust-fd-lock-3 with 4, rust-interprocess-1 with
2, rust-reqwest-0.11 with 0.12, rust-rustqlite-0.29 with 0.31,
rust-sequoia-gpg-agent-0.4 with 0.5, rust-sequoia-net-0.28 with 0.29,
rust-thiserror-1 with 2.
[cargo-development-inputs]: Add rust-pty-process-0.4.  Replace
rust-interprocess-1 with 2, rust-reqwest-0.11 with 0.12.

Change-Id: I545580e5f9dc249848527dd55f508bd82d4c5651

gnu: rust-sequoia-gpg-agent-0.5: Update to 0.5.1.

* gnu/packages/sequoia.scm (rust-sequoia-gpg-agent-0.5): Update to 0.5.1.
[cargo-inputs]: Replace rust-lalrpop-0.17 with 0.20,
rust-lalrpop-util-0.17 with 0.20.

Change-Id: Ia93ebb2838f4742c3b1249acdd33c02cd218361b

gnu: Add rust-pty-process-0.4.

* gnu/packages/crates-io.scm (rust-pty-process-0.4): New variable.

Change-Id: I979f7421d0a666f73c415ed4d33811eeac4ff6df

gnu: rust-sequoia-wot-0.13: Update to 0.13.3.

* gnu/packages/sequoia.scm (rust-sequoia-wot-0.13): Update to 0.13.3.
[cargo-inputs]: Replace rust-thiserror-1 with 2.

Change-Id: Ie0cf8c5fe835a5c541e8795c2e937888eac8f807

gnu: sequoia-sq: Update to 1.2.0.

* gnu/packages/sequoia.scm (sequoia-sq): Update to 1.2.0.
[cargo-inputs]: Add rust-clap-lex-0.7.  Replace rust-rusqlite-0.31 with
0.32, rust-terminal-size-0.2 with 0.4, rust-textwrap-0.15 with 0.16,
rust-thiserror-1 with 2.
[cargo-development-inputs]: Replace rust-predicates-2 with 3.

Change-Id: I4a86c3f8b5ed0be0e1f28dcd9e8ab7c54750d03a

gnu: miniflux: Update to 2.2.5.

* gnu/packages/web.scm (miniflux): Update to 2.2.5.

Change-Id: I1c7a6a25a79b2d287584721bde75c10cda76a595
Signed-off-by: Ian Eure <ian@retrospec.tv>

news: Add entry for 'hetzner-environment-type'.

* etc/news.scm: Add entry.

Change-Id: I7d2575d8e69855516cbf4c3747a23c344890321a
Co-authored-by: Florian Pelz <pelzflorian@pelzflorian.de>
Signed-off-by: Florian Pelz <pelzflorian@pelzflorian.de>

gnu: r-v8: Fix build with node-lts@22.

The version bump of node-lts from 20 to 22 also bumped the version in the so-file.

* gnu/packages/cran.scm (r-v8)[#:phases]<find-v8>: Look for libnode-so.127 as
provided by node-lts.

Change-Id: I4586e5775e7e55bbe6406c8d9bf78b4c64d91c0c

gnu: node-lts: Update to 22.12.0.

* gnu/packages/node.scm (node-lts): Update to 22.12.0.
[#:phases]<delete-problematic-tests>: Delete tests that fail due to the build
container. Delete tests that require a DNS resolver.
[inputs]: Replace c-ares by c-ares-for-node-lts.
Replace icu4c by icu4c-73.
[native-inputs]: Replace c-ares by c-ares-for-node-lts.
Replace icu4c by icu4c-73.

Change-Id: I8cbc790bd82c55b48f8917e6405b37569b29dc1c

gnu: llhttp-bootstrap: Update to 9.2.1.

* gnu/packages/patches/llhttp-ponyfill-object-fromentries.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/node.scm (llhttp-bootstrap): Update to 9.2.1.
[source]: Use patch.

gnu: libuv-for-node-lts: Update to 1.49.1.

* gnu/packages/libevent.scm (libuv-for-node-lts): Update to 1.49.1.

Change-Id: I8acf2fb174fffa90f7c3271088d0476c682df904

gnu: Add c-ares-for-node-lts.

* gnu/packages/adns.scm (c-ares-for-node-lts): New variable.

Change-Id: I547272f3fa3419a7659bf5b2d91a3e917c20d434

gnu: ddrescue: Update to 1.29.

* gnu/packages/disk.scm (ddrescue): Update to 1.29.

Change-Id: I90e1425282372c00cce2b999b22aace52ac232ec
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>

gnu: freeipmi: Update to 1.6.15.

* gnu/packages/freeipmi.scm (freeipmi): Update to 1.6.15.

Change-Id: I021df535ff7840a8d19c1586408d3d5e683ba551
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>