gnu: Add libxml2-with-zlib.

* gnu/packages/xml.scm (libxml2-with-zlib): New variable.

Change-Id: I2cc59d8f0758b4caf6f35dedabc9ee66f41ca11c

gnu: python-libxml2: Reintroduce simplified deprecation.

This is a fixup for commit c23b9a1 ("gnu: Remove libxml2-xpath0.") which
wrongly resolved a conflict.

* gnu/packages/xml.scm (python-libxml2): Reintroduce simplified deprecation.

Change-Id: Ia9e474329c0ec695e15571cbe99dbbb6ced0b3ab

gnu: Remove libxml2-xpath0.

* gnu/packages/xml.scm (libxml2-xpath0): Delete variable.

Fixes: #3516
Fixes: <https://bugs.gnu.org/79572>
Change-Id: I8fd49d0ce1394fc4e55a148e15c23388934524a4

gnu: distrobox: Update to 1.8.2.1.

* gnu/packages/containers.scm (distrobox): Update to 1.8.2.1.

Change-Id: Ic98a43b3b59136a74726df9dd23289e5750bb3b1

gnu: trealla: Update to 2.84.19.

* gnu/packages/prolog.scm (trealla): Update to 2.84.19.

Change-Id: Ibff6a882d9d410d2e6fe79a96b5b30c6a9d4d22d

graph: Add cyclonedx-json backend.

Validated with:

  guix graph guile -b cyclonedx-json > /tmp/cyc.json && \
    docker run -v /tmp/:/tmp/  cyclonedx/cyclonedx-cli validate --input-format json --input-file /tmp/cyc.json

* guix/graph.scm (emit-cyclonedx-prologue, emit-cyclonedx-epilogue,
emit-cyclonedx-node, emit-cyclonedx-edge): New procedures.
(%cyclonedx-backend): New variable.
(%graph-backends): Add %cyclonedx-backend.

Change-Id: Icc8c33cbc08da0137489d13bdad618ef55a14923

gnu: Remove references to deprecated ‘ruby-concurrent’.

* gnu/packages/ruby-xyz.scm (ruby-i18n)[propagated-inputs]: Use
‘ruby-concurrent-ruby’ instead of ‘ruby-concurrent’; remove label.
(ruby-asciidoctor-pdf, ruby-hamster, ruby-tzinfo)
(ruby-sucker-punch, ruby-sentry-core, ruby-sentry): Use ‘ruby-concurrent-ruby’
instead of ‘ruby-concurrent’.

Change-Id: I38761047bd6605e43839b8c3e31ec34d4e2c93c4

gnu: rofi-pass: Remove reference to deprecated input.

This is a followup to 79ff2b353aa3be6bd9e16f6de04e7edea05c51f1.

* gnu/packages/password-utils.scm (rofi-pass-wayland)[inputs]: Remove
‘replace’ clause.

Change-Id: Iee7393388e5d3396eb38cbc68a6cbe39623b4bfc

gnu: xfce4-volumed-pulse: Avoid deprecated input.

* gnu/packages/xfce.scm (xfce4-volumed-pulse)[inputs]: Change ‘keybinder-3.0’
to ‘keybinder’.

Change-Id: I2cabc125f3e4ff87ecbf983c6c324a42feb4146d

graph: graphml backend: emit label

* guix/graph.scm (emit-graphml-prologue): Declare label attribute.
(emit-graphml-node): Define label attribute.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

daemon: Use inline functions and variables instead of extern

Avoid separate declarations and definitions for so-called 'global' objects.

* nix/libstore/derivations.{cc, hh} (drvHashes): Use inline instead of separate
declaration and definition.
* nix/libstore/globals.{cc, hh} (settings, nixVersion): Same.
* nix/libstore/local-store.hh (drvsLogDir, deduplicationMinSize): Same.
* nix/libstore/optimise-store.cc (deduplicationMinSize): Same.
* nix/libstore/store-api.{cc, hh} (store): Same.
* nix/libutil/archive.{cc, hh} (defaultPathFilter): Same.
* nix/libutil/hash.{cc, hh} (base32Chars): Same and modify header files.
* nix/libutil/util.{cc, hh} (logType, verbosity, _writeToStderr,
_isInterrupted): Same.
* nix/local.mk: Modified according to the rename of shared.hh.
* nix/nix-daemon/guix-daemon.cc (blockInt, argvSaved, run): Same and
modify header files.
* nix/nix-daemon/nix-daemon.cc: Modify header files.
* nix/nix-daemon/shared.hh: Renamed to nix-daemon.hh

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

etc: teams: Add crypto team.

* etc/teams.scm (crypto): New team.
[Cayetano Santos]: Add to new team.
* CODEOWNERS: Rebuild.

Change-Id: Ie51ff65629c5b65ec8ee148e4dddce6d39007b54
Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: guile-fibers: Update to 1.4.2.

* gnu/packages/guile-xyz.scm (guile-fibers-1.4): Update to 1.4.2.

Change-Id: I0741989846c9ad38d918ef73b072325e2358ecb0

gnu: guile2.2-fibers: Update to 1.4.x.

* gnu/packages/guile-xyz.scm (guile2.2-fibers): Inherit from ‘guile-fibers’,
not ‘guile-fibers-1.1’.

Change-Id: I848d4cd33f1d83552f6ca0bd83478d6bf94ad377

gnu: git: Fix disallowed references.

This is a follow-up to ad461613d97f974e9e1aa30dc27753aa360476de.

* gnu/packages/version-control.scm (git)[#:disallowed-references]: Explicitly
list disallowed references instead of removing perl.

Fixes: guix/guix#4187 (Transformed git references disallowed perl)

gnu: age-plugin-yubikey: Install manpage.

* gnu/packages/rust-apps.scm (age-plugin-yubikey)[arguments]: Add a
phase to generate and install the manpage.

Change-Id: I449d26ec6376b4874b0fc7153533ba38ea71d5f9

gnu: Add age-plugin-yubikey.

* gnu/packages/rust-apps.scm (age-plugin-yubikey): New variable.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs): Add
age-plugin-yubikey.

Change-Id: I80e2a2f859f871567c72995b49ea3096b7be5fe8
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: Add dumbpipe.

* gnu/packages/rust-apps.scm (dumbpipe): New variable.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs): Add dumbpipe.

Change-Id: I515c3fa0d9f75a46e75c640cae0ab42fcf4ac1b2
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: cl-usocket: Update to 0.8.9.

* gnu/packages/lisp-xyz.scm (sbcl-usocket): Update to 0.8.9.

Change-Id: I697333c26eb18ce0fc234079c5dceb4676bc91c2

gnu: cl-simple-matrix: Update to 3.5.

* gnu/packages/lisp-xyz.scm (sbcl-simple-matrix): Update to 3.5.

Change-Id: I6ab3723165c2afaedf4bfc4bc941ba3a772c3147