gnu: go: Update to 1.9.4 [fixes CVE-2018-6574].
* gnu/packages/golang.scm (go-1.9): Update to 1.9.4.
nls: Update 'zh_CN' translation.
gnu: Add r-scran.
* gnu/packages/bioinformatics.scm (r-scran): New variable.
gnu: Add r-scater.
* gnu/packages/bioinformatics.scm (r-scater): New variable.
Co-authored-by: Raoul Jean Pierre Bonnal <ilpuccio.febo@gmail.com>
gnu: Add r-singlecellexperiment.
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): New variable.
gnu: Add r-beachmat.
* gnu/packages/bioinformatics.scm (r-beachmat): New variable.
gnu: Add r-rhdf5lib.
* gnu/packages/bioinformatics.scm (r-rhdf5lib): New variable.
gnu: Add r-shinydashboard.
* gnu/packages/web.scm (r-shinydashboard): New variable.
Co-authored-by: Raoul Jean Pierre Bonnal <ilpuccio.febo@gmail.com>
gnu: hdf5: Build with -fPIC.
* gnu/packages/maths.scm (hdf5)[arguments]: Add -fPIC to CFLAGS and CXXFLAGS.
gnu: emacs-emms-player-mpv: Update to 0.0.13.
* gnu/packages/emacs.scm (emacs-emms-player-mpv): Update to 0.0.13.
gnu: emacs-ob-ipython: Declare a source file-name.
* gnu/packages/emacs.scm (emacs-ob-ipython)[source]: Add 'file-name field.
gnu: emacs-d-mode: Declare a source file-name.
* gnu/packages/emacs.scm (emacs-d-mode)[source]: Add 'file-name field.
gnu: guile-emacs: Declare a source file-name.
* gnu/packages/emacs.scm (guile-emacs)[source]: Add 'file-name field.
gnu: vifm: Update to 0.9.1.
* gnu/packages/vim.scm (vifm): Update to 0.9.1.
gnu: libreoffice: Update to 5.4.5.1 [CVE-2018-6871].
* gnu/packages/check.scm (cppunit-1.14): New public variable.
* gnu/packages/libreoffice.scm (xmlsec-src-libreoffice): Remove variable.
(libreoffice): Update to 5.4.5.1.
[native-inputs]: Change CPPUNIT to CPPUNIT-1.14. Remove AUTOCONF and AUTOMAKE.
[inputs]: Add GPGME, XMLSEC-NSS and LIBLTDL. Remove XMLSEC-SRC-LIBREOFFICE.
Replace LIBJPEG with LIBJPEG-TURBO.
[arguments]: Remove xmlsec code from PREPARE-SRC-PHASE. Make sure GPGME++
headers are found. Add workaround for <https://bugs.gentoo.org/641812>. Add
"--disable-pdfium" to #:configure-flags.
* gnu/packages/xml.scm (xmlsec-nss): New public variable.
gnu: libmd: Update to 1.0.0.
* gnu/packages/crypto.scm (libmd): Update to 1.0.0.
[source](uri): Add freedesktop.org mirror.
gnu: gmtp: Update to 1.3.11.
* gnu/packages/libusb.scm (gmtp): Update to 1.3.11.
gnu: w3m: Update to 0.5.3+git20180125 [fixes CVE-2018-{6196,6197,6198}].
* gnu/packages/w3m.scm (w3m): Update to 0.5.3+git20180125.