system: GRUB menu entry says "beta" instead of "alpha"
* gnu/system.scm (kernel->grub-label): Change "alpha" to "beta'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
system: Add rfkill to '%base-packages'.
* gnu/system.scm (%base-packages): Add RFKILL.
gnu: python-pysam: Move cython and setuptools to native inputs.
* gnu/packages/bioinformatics.scm (python-pysam)[inputs]: Move
"python-cython" and "python-setuptools" from here...
[native-inputs]: ... to here.
gnu: deeptools: Update to 2.1.1.
* gnu/packages/bioinformatics.scm (deeptools): Update to 2.1.1.
[inputs]: Add "python2-numpydoc" and "python2-pybigwig".
gnu: deeptools: Change "propagated-inputs" to "inputs".
* gnu/packages/bioinformatics.scm (deeptools)[propagated-inputs]: Move
all inputs from here...
[inputs]: ...to here.
gnu: Add python-pybigwig.
* gnu/packages/bioinformatics.scm (python-pybigwig, python2-pybigwig):
New variables.
gnu: python-pysam: Update to 0.8.4.
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.8.4.
gnu: python-pysam, python2-pysam: Move to bioinformatics.scm.
* gnu/packages/python.scm (python-pysam, python2-pysam): Move to...
* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam):
...here.
lint: derivation: Disable grafts, but check replacements.
* guix/scripts/lint.scm (check-derivation): Pass #:graft? #f. When
'package-replacement' exists, compute its derivation.
gnu: Add procmail.
* gnu/packages/patches/procmail-ambiguous-getline-debian.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (procmail): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
guix build: -S returns the replacement's source.
Reported by Mark H Weaver.
* guix/scripts/build.scm (options->derivations): When SRC and GRAFT? are
true, use the source of P's replacement.
* tests/guix-build.sh: Add test.
hydra: Completely disable grafting.
* build-aux/hydra/gnu-system.scm (hydra-jobs): Parameterize '%graft?'.
Build package replacements when they are available.
hydra: Improve readability.
* build-aux/hydra/gnu-system.scm (hydra-jobs): Use 'filter-map' instead
of directly 'fold-packages'.
utils: Use '@' for separating package names and version numbers.
This provides the ability to use numbers in package names.
Fixes <http://bugs.gnu.org/19219>.
* guix/utils.scm (package-name->name+version): New procedure.
* gnu/packages.scm (%find-package): Add a FALLBACK? keyword argument.
Use the previous method when no package is found.
(specification->package+output, specification->package): Adapt
documentation to new syntax.
* doc/guix.texi (Invoking guix package, Invoking guix import): Likewise.
* guix/ui.scm (package-specification->name+version+output): Likewise.
* guix/scripts/import/hackage.scm (show-help): Likewise.
* tests/guix-build.sh: Adapt to new syntax.
* tests/guix-lint.sh: Likewise.
* tests/guix-package.sh: Likewise.
* tests/ui.scm ("package-specification->name+version+output"): Likewise.
* tests/utils.scm ("package-name->name+version"): Likewise.
* NEWS: Mention new syntax.
packages: Factorize package specification search.
* gnu/packages.scm (%find-package): New procedure.
(specification->package, specification->package+output): Use it.
gnu: icecat: Update bundled graphite2 to 1.3.6 [unspecified security fixes].
* gnu/packages/patches/icecat-update-graphite2-pt2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
gnu: nss: Update to 3.21.1.
* gnu/packages/gnuzilla.scm (nss): Update to 3.21.1.
gnu: Add password-store.
* gnu/packages/password-utils.scm (password-store): New variable.
Co-authored-by: Andreas Enge <andreas@enge.fr>
Co-authored-by: Leo Famulari <leo@famulari.name>