gnu: libassuan: Update to 2.5.6.

* gnu/packages/gnupg.scm (libassuan): Update to 2.5.6.

Change-Id: I8c3a58c088402096db7e9c17d554ab41973d8d74

gnu: imagemagick: Update to 6.9.13-5.

This is a follow-up to ac658511ae ("gnu: imagemagick: Update to 6.9.12-91."),
which patch didn't apply cleanly.

* gnu/packages/imagemagick.scm (imagemagick/stable): Update to 6.9.13-5.
[source]: Remove patch.
[configure-flags]: Specify correct --with-gs-font-dir location.
[native-inputs]: Add zstd.
* gnu/packages/patches/imagemagick-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.13-5.

Change-Id: Ic3ab5ea821de91fb18b80325414444e02e7eecb0

doc: Document changes to `copy-recursively'.

* doc/guix.texi: Document new key `select?' in `copy-recursively'.

Change-Id: I4b14ae5a1b40e0939456604f75597b5596b76f83
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>

gnu: commencement: hurd-headers-boot0: Update to 0.9.git20230520.

* gnu/packages/commencement.scm (hurd-headers-boot0): Update to
0.9.git20230520.

Change-Id: Ie9ae6bd56ae120019bd154d975161e4ee0636795

gnu: commencement: gnumach-headers-boot0: Update to 1.8+git20230410.

* gnu/packages/commencement.scm (gnumach-headers-boot0): Update to
1.8+git20230410.

Change-Id: I4658c089e4c4be34a4e4e540d90a64dd1717fdff

gnu: gnumach: Fix build for i686-linux.

* gnu/packages/patches/gnumach-fix-i686-linux-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/hurd.scm (gnumach)[source]: Use it.
[arguments]: Remove #:make-flags to avoid overriding now-essential CFLAGS set
by configure.  Rewrite to use gexps.
[supported-systems]: Add i686-linux.

Change-Id: Ibec03121f90b30160725c87e999e38f677b2e369

gnu: hwdata: Update to 0.374.

* gnu/packages/pciutils.scm (hwdata): Update to 0.374.
[arguments]: Don't modify #:phases.
[outputs]: Keep only "out" for pkg-config file.
(pciutils)[native-inputs]: Replace hwdata to "out" output.
* gnu/packages/graphics.scm (mangohub)[inputs]: Likewise.
* gnu/packages/kde-plasma.scm (kwin)[inputs]: Likewise.
* gnu/packages/virtualization.scm (libosinfo)[native-inputs]: Likewise.
* gnu/packages/wm.scm (wlroots)[native-inputs]: Likewise.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>

gnu: inkscape/stable: Build stable variant without imagemagick support.

This is done to allow imagemagick (not /stable variant) to be updated more
freely.

* gnu/packages/inkscape.scm (inkscape/stable)
[arguments]: Use gexps.  Add #:disallowed-references argument to guard against
referring to imagemagick/stable.  Add #:configure-flags argument.
[inputs]: Remove imagemagick.
[native-inputs]: Relpace imagemagick with imagemagick/stable.
* gnu/packages/inkscape.scm (inkscape): Use gexps.  Clear WITH_IMAGE_MAGICK
configure flag.
[inputs]: Add imagemagick.

Fixes: https://issues.guix.gnu.org/47479
Change-Id: Ifc812d2fc1eba5d2b45c3d7519ae38ac0294bd0a
Reported-by: Maxime Devos <maximedevos@telenet.be>

build-systems: cmake: Add support for #:allowed-references.

Also actually honor #:disallowed-references when cross-compiling.

* guix/build-system/cmake.scm (cmake-build): Add #:allowed-references keyword,
and pass it to gexp->derivation.
(cmake-cross-build): Likewise.  Also pass disallowed-references to
gexp->derivation which had apparently been forgotten.

Change-Id: I1e9861295359b090bd5407c5f76afddf890e36bf

gnu: bandage: Do not yet use the 'imagemagick/stable' variant.

Once <https://issues.guix.gnu.org/47475> (‘Closure of bandage is way too
large’) has been fixed, the variant will probably be usable.

* gnu/packages/bioinformatics.scm (bandage):
[arguments]<#:disallowed-references>: Once the issue
has been fixed, prevent the imagemagick/stable package from ending up in the
closure.
[native-inputs]: Note that 'imagemagick/stable' cannot be used yet.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Change-Id: Ie13100eb424b14971055ff91db49bc7029cb6168

guix: build-system: qt: Support #:disallowed-references.

* guix/build-system/qt.scm
(qt-build): Support #:allowed-references and #:disallowed-references.
(qt-cross-build): Likewise.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Change-Id: Ia2c36152bc3500a4e73b204b0a006f3bb9405d58

gnu: wpa-supplicant-gui: Use 'imagemagick/stable' variant.

* gnu/packages/admin.scm (wpa-supplicant-gui):
[native-inputs]: Use the 'imagemagick/stable' variant.
[arguments]<#:disallowed-phases>: Prevent 'imagemagick/stable'
from entering the closure.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Change-Id: I8a998857b2d366744da16ea4850b02c52ba7c565

gnu: sphinx: Use 'imagemagick/stable' variant.

As the store item does not retain a reference to imagemagick,
it should be safe to use the 'imagemagick/stable' variant.

* gnu/packages/sphinx.scm (python-sphinx)
[arguments] Add #:disallowed-references to make sure no references to
imagemagick are retained.
[native-inputs]: Use 'imagemagick/stable' instead of 'imagemagick' and explain
why that's a safe thing to do.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Change-Id: I04bdc94e012f3fcb30c4ec113a0ae2e9d9373210

build-system: pyproject: Add allowed/disallowed keyword arguments.

* gnu/build-system/pyproject.scm (pyproject-build) Add ALLOWED-REFERENCES and
DISALLOWED-REFERENCES keywords.

Change-Id: I404cbd8409332705b023c7a3b0b8fafbfaefe28b

build-system: python: Add allowed/disallowed keyword arguments.

* gnu/build-system/python.scm (python-build) Add ALLOWED-REFERENCES and
DISALLOWED-REFERENCES keywords.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Change-Id: I80bfe8e23b8475a8ca277cddd4275f1e757db8c3

gnu: Use 'gtk-doc/stable' in native-inputs instead of 'gtk-doc'.

Commit 9dea1618755891526f708aa335b4136c1302d16e only
replaced 'gtk-doc' with 'gtk-doc/stable' in the native-inputs
of some packages, but we may as well do this for all packages.

* gnu/packages/admin.scm (thermald) [native-inputs]:
Replace 'gtk-doc' with 'gtk-doc/stable'.
* gnu/packages/glib.scm (glib-with-documentation): Likewise.
* gnu/packages/mate.scm (mate-desktop, atril, caja-extensions)
(mate-utils, eom, engrampa, pluma, mate-polkit) [native-inputs]: Likewise.
* gnu/packages/messaging.scm
(libgnt, loudmouth) [native-inputs]: Likewise.
* gnu/packages/music.scm
(denemo, gsequencer) [native-inputs]: Likewise.
* gnu/packages/photo.scm (entangle) [native-inputs]: Likewise.
* gnu/packages/security-token.scm
(libu2f-host, libu2f-server) [native-inputs]: Likewise.
* gnu/packages/wm.scm (keybinder, keybinder-3.0)
[native-inputs]: Likewise.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Change-Id: I6c647ff1394e0a48bef0e6fb1ae43533673f1d79

gnu: inkscape/stable: Add imagemagick to inputs.

* gnu/packages/inkscape.scm (inkscape/stable) [inputs]:  Add imagemagick.

Fixes: https://issues.guix.gnu.org/47479
Change-Id: Ibcc05563e7a020c331907f6bd40038656bb54a34

guix: build: Expand `copy-recursively'.

* guix/build/utils.scm (copy-recursively): Add `select?' key.

Change-Id: Icfe226164bb88dfede58ae24c15a98db9b696c3b
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>

packages: Silence tar's support for --sort check output.

* guix/packages.scm (patch-and-repack)
<tar-supports-sort?>: Invoke with 'invoke/quiet', catching any message
condition.

Change-Id: I1feee605f77bfe633d22901a3250e4c530fee6a6

gnu: openjdk15: Make reproducible.

* gnu/packages/java.scm (openjdk15)[source]: Add patch.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>