gnu: Add java-geronimo-xbean-reflect.

* gnu/packages/java.scm (java-geronimo-xbean-reflect): New variable.

gnu: Add java-jdom.

* gnu/packages/java.scm (java-jdom): New variable.

gnu: Add java-log4j-1.2-api.

* gnu/packages/java.scm (java-log4j-1.2-api): New variable.

gnu: Add java-log4j-core.

* gnu/packages/java.scm (java-log4j-core): New variable.

gnu: Add java-kafka-clients.

* gnu/packages/java.scm (java-kafka-clients): New variable.

gnu: Add java-commons-beanutils.

* gnu/packages/java.scm (java-commons-beanutils): New variable.

gnu: Add java-commons-collections.

* gnu/packages/java.scm (java-commons-collections): New variable.

gnu: Add java-commons-csv.

* gnu/packages/java.scm (java-commons-csv): New variable.

gnu: Add java-jeromq.

* gnu/packages/java.scm (java-jeromq): New variable.

gnu: Add java-mail.

* gnu/packages/java.scm (java-mail): New variable.

gnu: Add java-jboss-jms-api-spec.

* gnu/packages/java.scm (java-jboss-jms-api-spec): New variable.

licenses: Add cddl1.1.

* guix/licenses.scm (cddl1.1): New variable.

gnu: Add java-iq80-snappy.

* gnu/packages/compression.scm (java-iq80-snappy): New variable.

gnu: Add java-snappy.

* gnu/packages/compression.scm (java-snappy): New variable.

gnu: Add bitshuffle.

* gnu/packages/compression.scm (bitshuffle): New variable.

build-system: texlive: Only make a union of directories.

* guix/build/texlive-build-system.scm (configure): Filter the input
directories to ensure that source tarballs are excluded.

gnu: Remove duplicates from (gnu packages tex).

* gnu/packages/tex.scm (texlive-latex-hyperref, texlive-latex-fancyvrb):
Remove duplicates.

gnu: r-genomeinfodbdata: Update to 0.99.1.

* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 0.99.1.

gnu: r-go-db: Update to 3.5.0.

* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.5.0.

gnu: r-org-ce-eg-db: Update to 3.5.0.

* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.5.0.