tests: Use sed instead of grep as a package with no dependencies.
* tests/graph.scm ("node-edges"): Choose SED instead of GREP as the
example.
Merge branch 'master' into core-updates
hydra: Add missing phase and inputs for 'make dist' job.
* build-aux/hydra/guix.scm (tarball-package): Inherit from 'guix-devel'
rather than 'guix'. Pass #:phases to 'dist-package'.
build-system/gnu: 'dist-package' can be passed the phases.
* guix/build-system/gnu.scm (dist-package): Add #:phases parameter and
honor it.
monad-repl: Close connection when leaving the monad REPL.
* guix/monad-repl.scm (store-monad-language): Add 'store' parameter and
use it. Remove call to 'open-connection'.
(enter-store-monad): Use 'with-store' and pass the store to
'store-monad-language.
gnu: julia: Update to 0.4.3.
* gnu/packages/julia.scm (julia): Update to 0.4.3.
(libuv-julia): Update to 07730c4bd595.
emacs: Move loading packages to "guix-emacs.el".
* emacs/guix-init.el: Move the code for auto-loading Emacs packages to...
(guix-package-enable-at-startup): Move to...
* emacs/guix-emacs.el (guix-package-enable-at-startup): ... here.
emacs: Make "guix-emacs.el" independent.
"guix-emacs.el" may be used just for "instructing" Emacs where to find
Emacs packages installed with Guix, so it should have as few
dependencies as possible.
See <http://lists.gnu.org/archive/html/guix-devel/2016-01/msg00022.html>.
* emacs/guix-emacs.el: Require 'guix-profiles' optionally.
(guix-emacs-load-autoloads): Use 'guix-profile-prompt' only if it is
available.
emacs: Complete --file in 'guix build' popup.
* emacs/guix-command.el (guix-command-improve-build-argument): Use
'guix-read-file-name' to complete --file option.
emacs: Add missing shell completions.
* emacs/guix-pcomplete.el (guix-pcomplete-complete-option-arg): Complete
file name for '--install-from-file' option of 'guix package' command,
and for '--file' and '--with-source' options of 'guix build' command.
gnu: isc-dhcp: Update to 4.3.3-P1 [fixes CVE-2015-8605].
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.3-P1.
gnu: samtools: Update to 1.3.
* gnu/packages/bioinformatics.scm (samtools): Update to 1.3.
[arguments]: Enable tests for all architectures; set ncurses in
configure-flags instead of make-flags; simplify "patch-tests" phase;
restore "configure" phase.
build: Use 127 as the Linux hash-bang limit.
Reported by taylanbayirli@gmail.com (Taylan Ulrich Bayırlı/Kammer).
* m4/guix.m4 (LINUX_HASH_BANG_LIMIT): Set to 127.
gnu: skribilo: Update to 0.9.3.
* gnu/packages/skribilo.scm (skribilo): Update to 0.9.3.
[native-inputs]: New field.
doc: Fix typo in "Build Systems".
* doc/guix.texi (Build Systems): Remove extra 's'.
gnu: boost: Update to 1.60.0.
* gnu/packages/boost.scm (boost): Update to 1.60.0.
[source]: Remove patch.
* gnu/packages/patches/boost-mips-avoid-m32.patch: Delete patch
* gnu-system.am (dist_patch_DATA): Remove patch.
Also fix dependent packages:
* gnu/packages/patches/csound-header-ordering.patch: New patch.
* gnu/packages/audio.scm (csound)[source]: Use it.
[arguments]: Add 'set-flags phase.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: New patch.
* gnu/packages/libreoffice.scm (libcmis)[source]: Use it.
(libreoffice)[arguments]: Add LDFLAGS to #:configure-flags.
(librevenge)[inputs]: Move boost from here...
[propogated-inputs]: to here.
[arguments]: Add LDFLAGS to #:configure-flags.
* gnu/packages/patches/openimageio-boost-1.60.patch: New patch.
* gnu/packages/graphics.scm (openimageio): Use it.
* gnu-system.am (dist_patch_DATA): Add patches.
gnu: boost: Use modify-phases.
* gnu/packages/boost.scm (boost)[arguments]: Use modify-phases.
gnu: perl: Add fix for CVE-2015-8607.
* gnu/packages/patches/perl-CVE-2015-8607.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[source]: Add patch.
gnu: perl: Update to 5.22.1.
* gnu/packages/perl.scm (perl): Update to 5.22.1.
build: 'make check' errors out if file name limits would be hit.
* Makefile.am (SCM_TESTS, SH_TESTS, TESTS, AM_TESTS_ENVIRONMENT)
(SCM_LOG_COMPILER, SH_LOG_COMPILER, AM_SCM_LOG_FLAGS)
(AM_SH_LOG_FLAGS): Move within 'if CAN_RUN_TESTS'.
(check-local) [!CAN_RUN_TESTS]: New target.
* daemon.am (AM_TESTS_ENVIRONMENT, TESTS): Ditto.
* m4/guix.m4 (GUIX_CHECK_FILE_NAME_LIMITS): Add parameter and set it.