gnu: ocl-icd: Delete dubiously deprecated duplicate definition.

This follows up on commit 3341b22f594398b3aa3ff930d99b74a78abd1a30 which
re-added ocl-icd.  opencl-icd-loader is a different, incompatible package.

* gnu/packages/opencl.scm (ocl-icd): Remove duplicate variable.

gnu: icecat: Update to 102.15.1 [security fixes].

This fixes fix mfsa2023-40, a critical webp vulnerability.
See https://www.mozilla.org/en-US/security/advisories/mfsa2023-40/

* gnu/packages/gnuzilla.scm (%icecat-base-version, icecat-source):
Update to 102.15.1.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>

gnu: julia-forwarddiff: Update to 0.10.36.

* gnu/packages/julia-xyz.scm (julia-forwarddiff): Update to 0.10.36.
[propagated-inputs]: Add julia-logexpfunctions.

Revert "gnu: guix: Update to 1.4.0-11.658de25e99."

Several people on IRC report that "rewrite-url, to-version specified" fails.

This reverts commit 1a0c7f71f0d74167f04377773791305260871b26.

gnu: cl-nkeymaps: Update to 1.1.0.

* gnu/packages/lisp-xyz.scm (sbcl-nkeymaps): Update to 1.1.0.
  [inputs]: Add sbcl-cl-str.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: font-gnu-unifont: Update to 15.1.01.

* gnu/packages/fonts.scm (font-gnu-unifont): Update to 15.1.01.
[source]: Adjust snippet to not remove non-existent precompiled files.
[arguments]: Disable parallel build.  Adjust custom 'install phase to
not duplicate actions from the Makefile.

gnu: python-fit-nbinom: Remove syntax error in setup.py.

* gnu/packages/python-xyz.scm (python-fit-nbinom)[arguments]: Add
phase 'remove-invalid-syntax.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>

gnu: python-plastid: Patch it for python 3.10.

* gnu/packages/bioinformatics.scm (python-plastid)[arguments]: Add new phase
'patch-for-python-3.10.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>

gnu: swineherd: Propagate inputs.

Swineherd does not wrap its inputs, so it needs to drag along all its Guile
inputs when installed.

* gnu/packages/admin.scm (swineherd)[inputs]: Move all from here...
[propagated-inputs]: ...to here.

gnu: guix: Update to 1.4.0-11.658de25e99.

* gnu/packages/package-management.scm (guix): Update to 1.4.0-11.658de25e99.

self: Build directories in chunks of max 25 files at a time.

This increases the chances of a successful `guix pull' on the Hurd,
see <https://issues.guix.gnu.org/65456>.

* guix/self.scm (compiled-modules)[process-directory]: Split building of
directories into chunks of max 25 files.  Also call gc.

gnu: rdiff-backup: Update to 2.2.6.

* gnu/packages/backup.scm (rdiff-backup): Update to 2.2.6.

gnu: qpwgraph: Update to 0.5.3.

* gnu/packages/audio.scm (qpwgraph): Update to 0.5.3.

gnu: borg: Update to 1.2.6.

* gnu/packages/backup.scm (borg): Update to 1.2.6.

.dir-locals.el: Update bug-reference configuration and document it.

(nil) <bug-reference-url-format>: Update URL.  Add comment.
* doc/contributing.texi (The Perfect Setup): New "Viewing bugs within Emacs"
subsection.

Co-authored-by: Brian Cully <bjc@spork.org>

gnu: Add qgit.

* gnu/packages/version-control.scm (qgit): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>

gnu: enblend-enfuse: Build documentation.

Notes:
* transfig is not needed according to the NEWS since 4.2.
* help2man is not optional.

* gnu/packages/photo.scm (enblend-enfuse)[native-inputs]: Remove libxml2,
tidy-html and transfig. Replace imagemagick with imagemagick/stable. Add
graphviz-minimal, font-ghostscript, librsvg, m4, perl-readonly,
texlive-texloganalyser, texlive-bold-extra, texlive-cm-mf-extra-bold,
texlive-comment, texlive-float, texlive-enumitem, texlive-mdwtools,
texlive-hyphenat, texlive-index, texlive-listings, texlive-microtype,
texlive-etoolbox, texlive-nag, texlive-ragged2e, texlive-shorttoc,
texlive-bigfoot, texlive-xstring and hevea.
[arguments]<#:phases>: Add 'fontconfig-cache, 'exclude-doc-from-check
and 'install-doc. Replace 'build and 'install.
[outputs]: Add 'doc.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>

gnu: enblend-enfuse: Backport upstream fixes.

Backport changes for reproducible builds & missing include.

* gnu/packages/patches/enblend-enfuse-reproducible.patch: New file.
* gnu/local.mk: Register it.
* gnu/packages/photo.scm (enblend-enfuse)[source]: Use newly added patch. Add
snippet to fix missing header.
[arguments]<#:phases>: Remove 'add-missing-include.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>

gnu: Remove extraneous imports.

Found by running 'guild compile -W3 gnu/packages/$module.scm', using guild
from the upcoming Guile.

* gnu/packages/admin.scm: Remove extraneous imports.
* gnu/packages/avr.scm: Likewise.
* gnu/packages/base.scm: Likewise.
* gnu/packages/bootloaders.scm: Likewise.
* gnu/packages/firmware.scm: Likewise.
* gnu/packages/linphone.scm: Likewise.
* gnu/packages/telephony.scm: Likewise.
* gnu/packages/cran.scm: Likewise.
* gnu/packages/kde.scm: Likewise.
* gnu/packages/libcanberra.scm: Likewise.
* gnu/packages/libreoffice.scm: Likewise.
* gnu/packages/mes.scm: Likewise.
* gnu/packages/mingw.scm: Likewise.
* gnu/packages/serialization.scm: Likewise.
* gnu/packages/sync.scm: Likewise.
* gnu/packages/syncthing.scm: Likewise.
* gnu/packages/terminals.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/wm.scm: Likewise.
* gnu/packages/emulators.scm: Likewise.

Reviewed-by: Ludovic Courtès <ludo@gnu.org>

gnu: lightning: Update to 2.2.2.

* gnu/packages/assembly.scm (lightning): Update to 2.2.2.