gnu: python-conda-inject: Switch off tests. * gnu/packages/package-management.scm (python-conda-inject): Disable tests as they expect configured Conda environment to run. [native-inptus]: Remove python-pytest. Change-Id: I5372a3234b567f305449a645c60b87098f8d89ac
gnu: python-mgatk: Update to 0.7.0. * gnu/packages/bioinformatics.scm (python-mgatk): Update to 0.7.0. [arguments] <phases>: Remove 'python3-compatibility as resolved upstream. Change-Id: I389dd546f4a112bf52758c216baedfdcf0613bf9
gnu: snakemake: Move inputs to propagated-inputs. * gnu/packages/python-science.scm (snakemake): Swap INPUTS to PROPAGATED-INPUTS as the package may be included in others. Change-Id: I034d8b18a6f4d145bf7b08584b73a5abd19f955e
gnu: python-conda-inject: Simplify check. * gnu/packages/package-management.scm (python-conda-inject) [arguments] <phases>: Use default 'check. Change-Id: I6ec9a95abca5ca70d1d275523160b9e4ef928f5d
Revert "gnu: python-jplephem-build: Fix build." This reverts commit 77254ef42da21593fcaf84e36957c882eb241511. * gnu/packages/astronomy.scm (python-jplephem): Nothing is wrong with tests, no need to skip any. Change-Id: I8582068ff857055788295cb3c459f782cb357185
gnu: python-apprise: Update to 1.9.3. * gnu/packages/python-xyz.scm (python-apprise): Update to 1.9.3, fix build. [arguments] <test-flags>: Deselect only one freshly failing test. [native-inputs]: Remove python-pytest-cov. [synopsis]: Simplify. [description]: Fix fill paragraph indentation. Change-Id: If546f2b18da5ed6c25c94557d8f8ee89f67f3e9a
gnu: Remove pybind11-2.13. It's the same version as pybind11. * gnu/packages/python-xyz.scm (pybind11-2.13): Delete variable. * gnu/packages/python-xyz.scm (python-optree) [native-inputs]: Remove pybind11-2.13; add pybind11. Change-Id: I3c3a8e37da4dcfff90c23a0392fb474d55ad2a1d
gnu: snakemake: Rename variable in python-xyz. There is a duplicated variable with this name in python-science but different version, rename the variable in python-xyz to reflect it's version. * gnu/packages/python-xyz.scm (snakemake): Rename variable to snakemake-5. (snakemake-6): Inherit from snakemake-5. Change-Id: Iabb67d68ea5b896a2524eaf9bf73669068cccaeb
gnu: grip: Fix build. * gnu/packages/python-web.scm (grip): Fix build and refresh package style. [build-system]: Switch to pyproject. [arguments] <test-flags>: Ignore all tests requiring networking. <phases>: Add 'fix-response-encoding; use default 'check. [native-inputs]: Add python-setuptools, and python-wheel. [description]: Fix fill column indentation. Change-Id: I131ab5efa965760f05411c7dbdb2349d9e8cbcc3
gnu: Add snakemake. * gnu/packages/python-science.scm (snakemake): New variable. Change-Id: Id61c7955684f5186b9dc884f0c9de4ec73f766ea Signed-off-by: Steve George <steve@futurile.net>
gnu: Add python-conda-inject. * gnu/packages/package-management.scm (python-conda-inject): New variable. Change-Id: Ic4b91e01b68c62fd91a0f6d77e57c6d32c4b5d03 Signed-off-by: Steve George <steve@futurile.net>
gnu: Add python-snakemake-interface-storage-plugins. * gnu/packages/python-science.scm (python-snakemake-interface-storage-plugins): New variable. Change-Id: Ie74edfdc2535f7f26f0c6210a274dfc351336129 Signed-off-by: Steve George <steve@futurile.net>
gnu: Add python-snakemake-interface-software-deployment-plugins. * gnu/packages/python-science.scm (python-snakemake-interface-software-deployment-plugins): New variable. Change-Id: Ia3f6beed3a3ea02607645ca127be52f328b429bb Signed-off-by: Steve George <steve@futurile.net>
gnu: Add python-snakemake-interface-report-plugins. * gnu/packages/python-science.scm (python-snakemake-interface-report-plugins): New variable. Change-Id: I8705ba63df668d46ffda575b18ee97bb65acdc6c Signed-off-by: Steve George <steve@futurile.net>
gnu: Add python-snakemake-interface-executor-plugins. * gnu/packages/python-science.scm (python-snakemake-interface-executor-plugins): New variable. Change-Id: I6bd9c6aec7293b8412c20dac04f82d867400d71c Signed-off-by: Steve George <steve@futurile.net>
gnu: Add python-snakemake-interface-common. * gnu/packages/python-science.scm (python-snakemake-interface-common): New variable. Change-Id: Iaac3acb7f57c3b6aedda7fe48daccbd952faddd5 Signed-off-by: Steve George <steve@futurile.net>
gnu: Add python-argparse-dataclass. * gnu/packages/python-xyz.scm (python-argparse-dataclass): New variable. Change-Id: If669a77f36753b4639136fc612dda42aca1a61f9 Signed-off-by: Steve George <steve@futurile.net>
gnu: Remove python-setuptools-57. * gnu/packages/python-build.scm (python-setuptools-57): Delete variable. Change-Id: I151d8992c9bca65aa114df95354f740a4560d2f9 Signed-off-by: Steve George <steve@futurile.net>
gnu: python-louvain: Use pyproject-build-system. * gnu/packages/graph.scm (python-louvain) [build-system]: Switch from python-build-system to pyproject-build-system. [native-inputs]: Replace python-setuptools-57 by python-setuptools. Add python-wheel. Change-Id: I3c07564dd8fd3f75e33a2cc9737372e28c57f733 Signed-off-by: Steve George <steve@futurile.net>
gnu: python-importlib-resources: Update python-setuptools input. * gnu/packages/python-xyz.scm (python-importlib-resource) [native-inputs]: Replace python-setuptools-57 by python-setuptools. Signed-off-by: Steve George <steve@futurile.net>