gnu: Add java-commons-bcel.
* gnu/packages/java.scm (java-commons-bcel): New variable.
gnu: Add java-cofoja.
* gnu/packages/java.scm (java-cofoja): New variable.
gnu: Add java-picard.
* gnu/packages/bioinformatics.scm (java-picard): New variable.
gnu: java-htsjdk: Update to 2.3.0.
* gnu/packages/bioinformatics.scm (java-htsjdk): Update to 2.3.0.
[arguments]: Build with JDK 8.
[inputs]: Add java-ngs, java-snappy, java-commons-compress,
java-commons-logging-minimal, java-commons-jexl-2, and java-xz.
[native-inputs]: Add java-testng.
gnu: Add java-commons-jexl-2.
* gnu/packages/java.scm (java-commons-jexl-2): New variable.
gnu: Add javacc-4.
* gnu/packages/java.scm (javacc-4): New variable.
gnu: Add javacc.
* gnu/packages/java.scm (javacc): New variable.
gnu: Add java-snappy-1.
* gnu/packages/compression.scm (java-snappy-1): New variable.
gnu: librecad: Ensure that icons are found at runtime.
* gnu/packages/engineering.scm (librecad)[arguments]: Add phase
"wrap-executable".
gnu: r-rhdf5: Fix build phase.
* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Fix "unpack-smallhdf5"
phase.
gnu: shotwell: Update to 0.27.1.
* gnu/packages/gnome.scm (shotwell): Update to 0.27.1.
Update e-mail for ng0.
* .mailmap: Update entries for ng0.
Signed-off-by: Leo Famulari <leo@famulari.name>
gnu: fish-guix: Use new URL.
* gnu/packages/shells.scm (fish-guix)[source]: Use new URL.
(home-page): Use new URL.
Signed-off-by: Leo Famulari <leo@famulari.name>
gnu: python-pycanberra: Switch to new download URL.
* gnu/packages/libcanberra.scm (python-pycanberra)[source]: Use new URL.
Signed-off-by: Leo Famulari <leo@famulari.name>
gnu: crawl: Update to 0.20.1.
* gnu/packages/games.scm (crawl): Update to 0.20.1.
(crawl-tiles): Update to 0.20.1.
[native-inputs]: Add pngcrush.
Signed-off-by: Leo Famulari <leo@famulari.name>
gnu: openntpd: Update to 6.2p3.
* gnu/packages/ntp.scm (openntpd): Update to 6.2p3.
gnu: exim: Fix CVE-2017-16943.
* gnu/packages/patches/exim-CVE-2017-16943.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (exim)[source]: Use it.
gnu: image: Rename pngcrunch to pngcrush and update it.
* gnu/packages/image.scm (pngcrush): Renamed from pngcrunch.
[version]: update to 1.8.13.
[arguments]: Use the nolib Makefile.
[origin]: Use the no-lib tar.
[home-page]: update to the new website.
(pngcrunch): New deprecation variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
tests: messaging: Enable Prosody DIGEST-MD5 auth mechanism.
GNU Freetalk doesn't support SCRAM-SHA-1.
* gnu/tests/messaging.scm (%test-prosody): Override default
disable-sasl-mechanisms value.