gnu: l2md: Fix build on 32-bit systems.

* gnu/packages/mail.scm (l2md)[source]: Add snippet to gate macOS build
fix to only apply when building for Apple devices.

Change-Id: Id303a89ec78ce160cfb6ebed232a841c8283e812

gnu: libgit2-1.7: Update to 1.7.2.

* gnu/packages/version-control.scm (libgit2-1.7): Update to 1.7.2.

Change-Id: I60ad4aa2a5b29b027755cf8add848bd4a8b71282

gnu: libgit2: Introduce ‘libgit2-1.5’ variable.

* gnu/packages/version-control.scm (libgit2): Rename to…
(libgit2-1.5): … this.
(libgit2): Alias for ‘libgit2-1.5’.

Change-Id: I7f6aff23df3b968d914736fe723dcdd435176ce2

gnu: guile-git: Depend on libgit2 1.7.

* gnu/packages/guile.scm (guile-git)[inputs]: Replace LIBGIT2-1.3 with
LIBGIT2-1.7.

Change-Id: Ia386f977b0888b7bd9b26443ac6150428fda2155

gnu: guile-git: Update to 0.6.0.

* gnu/packages/guile.scm (guile-git): Update to 0.6.0.
[source]: Remove ‘patches’ field.
* gnu/packages/patches/guile-git-adjust-for-libgit2-1.2.0.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.

Change-Id: I49300461389bc24a9802fbda5e374a330ffc3715

gnu: libgit2: Set ‘GITTEST_FLAKY_STAT’ when running tests on GNU/Hurd.

* gnu/packages/version-control.scm (libgit2)[arguments]: Install
‘pre-check’ phase when ‘target-hurd?’ returns true.

Change-Id: I664d4aa2a0ad76a10a47ae7bc3c5912756972b46

gnu: Remove python-nltk-3.4.

* gnu/packages/python-xyz.scm (python-nltk-3.4): Remove variable.

Change-Id: I865380c0428d459147c0980065719c32bf67075a

gnu: python-lunr: Update to 0.7.0.post1.

* gnu/packages/python-xyz.scm (python-lunr): Update to 0.7.0.post1.
[build-system]: Use pyproject-build-system.
[arguments]: Disable tests that need nodejs.
[native-inputs]: Remove python-mock; add python-coverage,
python-hatch-fancy-pypi-readme, python-hatchling, python-pytest-timeout, and
python-tox.
[propagated-inputs]: Remove python-nltk-3.4; add python-importlib-metadata and
python-typing-extensions.

Change-Id: Ide9b0d98878dd8972d883c1c0e391a9a4b660eba

gnu: Add pass-coffin

* gnu/packages/password-utils.scm (pass-coffin): New variable.

Reviewed-by: Steve George <steve@futurile.net>

Change-Id: I2fdf6c755b9b75780c5a3c0304e5b961a15640a4
Signed-off-by: Andreas Enge <andreas@enge.fr>

gnu: Add paritwine.

* gnu/packages/algebra.scm (paritwine): New variable.

Change-Id: If2a55dd4a42d4d27a67249bd11592635ade20351

gnu: cm: Update to 0.4.3.

* gnu/packages/algebra.scm (cm): Update to 0.4.3.
[inputs]: Add flint.

Change-Id: Icb1a01a2abcdf6a0685503a0d032a21b42d464d6

gnu: r-dmrseq: Update to 1.22.1.

* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.22.1.

Change-Id: I7c05a4927a3984917c6de7bc5daa3f28794894d7

gnu: r-beachmat: Update to 2.18.1.

* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.18.1.

Change-Id: I854c4c21cad66e3fb2bfe63fe01c31c3aff7d109

gnu: r-hdf5array: Update to 1.30.1.

* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.30.1.

Change-Id: I48d733554b9c74e10d29b123008ba6d20fa85641

gnu: r-variancepartition: Update to 1.32.5.

* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.32.5.

Change-Id: I9195cbe28f85001bcd91fa3d57f0017db5b352b7

gnu: r-a4: Update to 1.50.1.

* gnu/packages/bioconductor.scm (r-a4): Update to 1.50.1.

Change-Id: If07b255590ad99146a81729af073aac67cd535d4

gnu: r-chippeakanno: Update to 3.36.1.

* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.36.1.

Change-Id: I133f7ca3032f5f5722a8d5d9cbf1bf1da42ff4a9

gnu: r-seqarray: Update to 1.42.2.

* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.42.2.

Change-Id: I6b4915c8dbdf14054125cac33bfddde4605fbc58

gnu: r-edger: Update to 4.0.16.

* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.16.

Change-Id: I542bbe7f290a5282f76eea7b88f605f6fa714624

gnu: r-anf: Update to 1.24.1.

* gnu/packages/bioconductor.scm (r-anf): Update to 1.24.1.

Change-Id: I5843d257e4312101fb1b0dc9bbb49bd088bb3b91