~ruther/guix-local

591908f8 — Nicolas Graves 1 year, 4 months ago
gnu: pairadise: Add missing native-inputs.

* gnu/packages/bioinformatics.scm (pairadise)[native-inputs]: Add
python-setuptools and python-wheel.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
d8b3d0ec — Nicolas Graves 1 year, 4 months ago
gnu: python-biom-format: Update to 2.1.16.

* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.16.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
aae586b0 — Sharlatan Hellseher 1 year, 4 months ago
gnu: Remove python-asynctest.

No updates since 2019, fails to build and has no users in Guix.  See
<https://github.com/Martiusweb/asynctest/issues/163> there is a standard
'unittest.IsolatedAsyncioTestCase' drop-in replacement.

* gnu/packages/python-xyz.scm (python-asynctest): Delete variable.

Change-Id: If63cfd698a74f86c6895db04e0d7cd02728ae757
9c3f7ebb — Sharlatan Hellseher 1 year, 4 months ago
gnu: python-asyncua: Fix build.

python-asynctest has not been updated for 6y and fails to build, but
it's optional in tests. This change removes it from native inputs.

* gnu/packages/engineering.scm (python-asyncua): Update to 1.1.5.
[source]: Mention about the third party submodule on recursive option.
[native-inputs]: Remove python-asynctest and python-pytest-runner; add
python-pytest.

Change-Id: I9d268c43ebe97fcaacc5125e1038f6ff371d39b2
2999dea8 — Sharlatan Hellseher 1 year, 4 months ago
gnu: python-asn1tools: Update to 0.167.0 and fix build.

* gnu/packages/python-xyz.scm (python-asn1tools): Update to 0.167.0, fix
build.
[build-system]: Swap to pyproject-build-system.
[arguments] <test-flags>: Skip 7 failing tests.
[native-inputs]: Add python-pytest, python-setuptools, and python-wheel.

Change-Id: I36d12d9bfe2fd6d62a75dd0d30de42a782c4a746
5101eb69 — Sharlatan Hellseher 1 year, 4 months ago
gnu: nikola: Skip one test.

* gnu/packages/python-xyz.scm (nikola) [arguments] <test-flags>: Skip
one test.

Change-Id: I10d4edf07b7c7b4e19020773215da5eae27cd0f4
633e0ca8 — Sharlatan Hellseher 1 year, 4 months ago
gnu: gita: Improve package style.

* gnu/packages/version-control.scm (gita): Use G-expressions, refresh
style.
[native-inputs]: Remove git; add git-minimal/pinned.

Change-Id: I61707538f5248e14207aa2ca0931286741697ed8
79938355 — Sharlatan Hellseher 1 year, 4 months ago
gnu: gita: Fix indentation.

* gnu/packages/version-control.scm (gita): Fix indentation.

Change-Id: Ib918212b2f6659897c00a4c452776cf0e5d36c35
ec5a9784 — Sharlatan Hellseher 1 year, 4 months ago
gnu: gita: Update to 0.16.7.2.

* gnu/packages/version-control.scm (gita): Update to 0.16.7.2.
[build-system]: Swap to pyproject-build-system.
[arguments] <test-flags>: Ignore one test file.
<phases>: Use default 'check, add 'pre-check.
[phases] {install-shell-completions}: Fix path to completion files.
[propagated-inputs]: Remove python-pyyaml; add python-argcomplete.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I3b53b804c4b436613c5463911716f1a832064517
8618fd52 — Sharlatan Hellseher 1 year, 4 months ago
gnu: Remove python-nose-randomly.

Deprecated: "This repository was archived by the owner on Feb 8,
2019. It is now read-only."; fails to build, has no user in Guix.

* gnu/packages/check.scm (python-nose-randomly): Delete variable.

Change-Id: I1866da62f092fefc7f6167fa8f80ad33402bfb40
8a0e82f2 — Ricardo Wurmus 1 year, 4 months ago
gnu: python-biopython-1.73: Make compatible with Python 3.11.

* gnu/packages/bioinformatics.scm (python-biopython-1.73)[arguments]: Add
phases 'python3.11-compatibility, 'numpy-compatibility, 'set-home,
'build-extensions, and 'patch-tests.

Change-Id: Iac6b0638dd5699a7b11862bff9cce1e7b2fee49b
ca3d1683 — Ricardo Wurmus 1 year, 4 months ago
gnu: python-biopython: Update to 1.85.

* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.85.
[arguments]: Add phase 'numpy-compatibility; replace 'check phase.

Change-Id: I4e3ef0d9a357155e36ef61052af4d90f4fa95d5e
177935dc — Ricardo Wurmus 1 year, 4 months ago
gnu: cpp-httplib: Update to 0.20.0.

* gnu/packages/cpp.scm (cpp-httplib): Update to 0.20.0.

Change-Id: I279c00feb30d11b636c122b6ba42ef7bb852012e
842cca00 — Ricardo Wurmus 1 year, 4 months ago
gnu: mididings: Update to 0-2.bc71ea9.

This also makes mididings compatible with Python 3.11.

* gnu/packages/music.scm (mididings): Update to 0-2.bc71ea9.
[build-system]: Use meson-build-system.
[inputs]: Add python.

Change-Id: I3a68cd4f5f8e9cf3c89cc7bb178e03ec9d045494
7628b065 — Ricardo Wurmus 1 year, 4 months ago
gnu: guitarix: Make compatible with Python 3.11.

* gnu/packages/audio.scm (guitarix)[arguments]: Add phase
'python3.11-compatibility.

Change-Id: I09d5517f0d2cbe0b4b888f812cc8109f6a5f1f08
589a74c2 — Ricardo Wurmus 1 year, 4 months ago
gnu: mypaint: Make compatible with Python 3.11.

* gnu/packages/image.scm (mypaint)[arguments]: Add phase
'python3.11-compatibility.

Change-Id: I4e103ad169148127c388a40b999b1a0ae4868f4e
96d6060e — Ricardo Wurmus 1 year, 4 months ago
gnu: blueman: Use G-expressions.

* gnu/packages/networking.scm (blueman)[arguments]: Use G-expressions to avoid
ASSOC-REF.

Change-Id: I38a6e0487fdf1597b89bd395c712b9da672daef1
f4579a4f — Ricardo Wurmus 1 year, 4 months ago
gnu: blueman: Update to 2.4.4.

* gnu/packages/networking.scm (blueman): Update to 2.4.4.

Change-Id: I1e86739e1410e12deea05c726a13bbfa5f8858e0
c683efc2 — Ricardo Wurmus 1 year, 4 months ago
gnu: aubio: Use JACK 2.

* gnu/packages/audio.scm (aubio)[inputs]: Replace jack-1 with jack-2.

Change-Id: I5f3ecdaef3852b6d21caea3135ddb1764d712e48
5d9eb703 — Ricardo Wurmus 1 year, 4 months ago
gnu: aubio: Make compatible with Python 3.11.

* gnu/packages/audio.scm (aubio)[arguments]: Use G-expression; add phase
'python3.11-compatibility.

Change-Id: I6739a18db4c1642dfca9299a821292a254726695
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