gnu: ocaml: Install man pages in share/man.

* gnu/packages/ocaml.scm (ocaml): Pass -mandir to configure.

gnu: pth: Install man pages in share/man.

* gnu/packages/pth.scm (pth): Add --mandir to configure flags.

gnu: expect: Install man pages in share/man.

* gnu/packages/tcl.scm (expect): Add --mandir configure flag.
  Use 'let' to simplify configure flags generation.

gnu: zip: Improve build process and install man pages in share/man.

* gnu/packages/zip.scm (zip): Eliminate custom configure phase which copied
  and patched the Makefile.  Instead add "-f" and "prefix" to make-flags, as
  well as "MANDIR".  Remove "generic_gcc" from the make-flags, so that it will
  not be passed during other phases involving 'make'.  Instead replace the
  'build' phase with one that specifies the "generic_gcc" target.

gnu: lua: Install man pages in share/man.

* gnu/packages/lua.scm (lua): Use 'system*' instead of 'system'.
  Add INSTALL_MAN argument to 'make'.

gnu: indent: Install docs in share/doc.

* gnu/packages/indent.scm (indent): Add a phase to fix the docdir
  setting in doc/Makefile.in.

guix package: 'search-path-environment-variables' traverses module tree once.

* guix/scripts/package.scm (search-path-environment-variables)[manifest-entry->package]:
  Use 'find-best-packages-by-name' instead of 'find-packages-by-name'.
  On a profile with 140 packages, this reduces execution time of this
  procedure from 5.8 seconds to 2.9 seconds (50% improvement.)

guix package: Register non-default profiles as GC roots.

* guix/scripts/package.scm (maybe-register-gc-root): New procedure.
* tests/guix-package.sh (profile): Grep the output of "guix gc
  --list-live" in a couple of places.

gnu: net-tools: Install man pages and locales in share, not usr/share.

* gnu/packages/linux.scm (net-tools): Add 'INSTALLNLSDIR' and 'mandir'
  variables to make flags.

gnu: libssh: Upgrade to 0.6.3.

* gnu/packages/ssh.scm (libssh): Upgrade to 0.6.3.

gnu: pulseaudio: Increase timeouts for tests.

* gnu/packages/pulseaudio.scm: Set the 'CK_DEFAULT_TIMEOUT' environment
  variable to 120 in the 'pre-check' phase.  Suggested by Ludovic Courtès.

gnu: file: Upgrade to 5.18.

* gnu/packages/file.scm (file): Upgrade to 5.18.

gnu: guile-json: Install under .../site/2.0.

* gnu/packages/guile.scm (guile-json)[source]: Add 'snippet'.

pki: Keep ACL in native sexp format to speed up 'authorized-key?'.

* guix/pki.scm (acl-entry-sexp, acl-sexp): Remove.
  (public-keys->acl, current-acl): Return a native sexp.
  (acl->public-keys, authorized-key?): Expect ACL to be a native sexp.
* guix/scripts/archive.scm (authorize-key): Convert ACL to
  canonical-sexp when writing it.

substitute-binary: Avoid consing 'regexp-exec' arguments.

* guix/scripts/substitute-binary.scm (regexp-exec): Change formals
  to (rx str . rest).

substitute-binary: Avoid reloading the ACL repeatedly.

* guix/scripts/substitute-binary.scm (guix-substitute-binary) <--query>:
  Cache the result of (current-acl); pass it to 'valid-narinfo?' calls.
  This saves 12% wall-clock time for "guix build emacs -n".

gnu: Add Bogofilter.

* gnu/packages/mail.scm (bogofilter): New variable.

gnu: Add guile-json.

* gnu/packages/guile.scm (guile-json): New variable.

Use 'signature-case' in (guix nar) and 'substitute-binary'.

* guix/nar.scm (restore-file-set)[assert-valid-signature]: Rewrite in
  terms of 'signature-case'.
* guix/scripts/substitute-binary.scm (narinfo-signature->canonical-sexp):
  Call 'leave' instead of 'raise' when SIGNATURE is invalid.
  (&nar-signature-error, &nar-invalid-hash-error): Remove.
  (assert-valid-signature): Add 'narinfo' parameter; remove 'port'.
  Rewrite in terms of 'signature-case' and 'leave'.  Mention NARINFO's
  URI in error messages.  Adjust caller.
  (narinfo-sha256): New procedure.
  (assert-valid-narinfo): Use it.
  (valid-narinfo?): Rewrite using 'narinfo-sha256' and
  'signature-case'.
* tests/substitute-binary.scm (assert-valid-signature,
  test-error-condition): Remove.
  ("corrupt signature data", "unauthorized public key", "invalid
  signature"): Remove.

pki: Add 'signature-case' macro.

* guix/pki.scm (%signature-status): New procedure.
  (signature-case): New macro.
* tests/pki.scm (%secret-key, %alternate-secret-key): New variables.
  ("signature-case valid-signature", "signature-case invalid-signature",
  "signature-case hash-mismatch", "signature-case unauthorized-key",
  "signature-case corrupt-signature"): New tests.