gnu: Add python-marshmallow-3.

* gnu/packages/python-xyz.scm (python-marshmallow-3): New variable.

Change-Id: I60c15b286a75f3255403da6603e2965290d5d68a

gnu: python-xxhash: Update to 3.5.0.

* gnu/packages/digest.scm (python-xxhash): Update to 3.5.0.
[arguments] <test-backend>: Use 'unittest.
<phases>: Add 'build-extensions.
[native-inputs]: Remove python-setuptools-scm and python-wheel.

Change-Id: I7f4f5e3f06886318ec11ad3064aba381b7b1245f

gnu: python-setuptools-gettext: Run tests and fix them.

* gnu/packages/python-xyz.scm (python-setuptools-gettext)
[source]: Switch to git-fetch.
[native-inputs]: Add python-pytest, remove python-wheel.

Change-Id: I969a8d6f6e41df7e1f6729a9b4e9a9d5ec782303
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-merge3: Run tests and fix them.

* gnu/packages/python-xyz.scm (python-merge3)
[source]: Switch to git-fetch.
[arguments]<#:test-backend>: Set it.
[native-inputs]: Remove python-wheel.

Change-Id: I57dc757b036cee4baba12c0021a5ddb5aab65a26
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-pygithub: Update to 2.8.1.

* gnu/packages/python-xyz.scm (python-pygithub): Update to 2.8.1.
[arguments]<#:phases>: Remove 'check phase replacement, add phase 'set-version.
[propagated-inputs]: Add python-typing-extensions,
python-urllib3. Remove python-cryptography.
[native-inputs]: Add python-responses, python-setuptools,
python-setuptools-scm.

Change-Id: I047f053d24b46d4697904101697de0a52a4ba5c9
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-pyannotate: Fix tests.

* gnu/packages/python-check.scm (python-pyannotate)
[source]: Switch to git-fetch.
[arguments]<#:test-backend>: Set it.
[native-inputs]: Remove python-wheel.
[propagated-inputs, description]: Improve style.

Change-Id: I4f310eba2117b062aedc2fad4a96537604dd8bd6
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-zeroconf: Ignore failing tests.

* gnu/packages/python-xyz.scm (python-zeroconf)
[arguments]<#:test-flags>: Ignore additional failing test.
[native-inputs]: Add python-pytest-asyncio. Remove python-wheel.

Change-Id: Iac76a731e91d1287c47f4af9b769d78bca22c9ab
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-isal: Set unittest test-backend.

* gnu/packages/python-compression.scm (python-isal)
[source]<snippet>: Improve style, use G-expressions.
[arguments]<#:test-backend>: Set it.
<#:phases>: Improve style.

Change-Id: I8d05af8720f6fcd31aae0b83a70efc8dfd6e4e9f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-publicsuffixlist: Set unittest test backend.

* gnu/packages/python-web.scm (python-publicsuffixlist)[arguments]
<#:test-backend>: Set it.
[native-inputs]: Remove python-wheel.

Change-Id: I213887319fbae770dccf391327ac8a16bc01a1b4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-signedjson: Update to 1.1.4.

* gnu/packages/python-xyz.scm (python-signedjson): Update to 1.1.4.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:phases>: Add phase 'set-version.
[native-inputs]: Add python-pytest, python-setuptools.

Change-Id: I9e1c804a0f7a3634a4ce487d581799935b6e7f10
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-pytest-forked: Add python-py propagated-input.

* gnu/packages/check.scm (python-pytest-forked)[propagated-inputs]:
Add python-py.

Change-Id: I9ff007703c4099016eedc276af195e8612fb20fd
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-ephem: Fix 'check phase.

* gnu/packages/astronomy.scm (python-ephem)[arguments]
<#:test-flags>: Ignore failing test.
<#:phases>: Add phase 'remove-installed-tests.
[native-inputs]: Add python-pytest, remove python-wheel.

Change-Id: I128d996ac19b413cc0680c759a21493ed722d86e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-mercantile: Switch to pyproject.

* gnu/packages/python-xyz.scm (python-mercantile):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.
[description]: Improve style.

Change-Id: Id6c1a3750489947935ac32c6826969a5a83f00d8
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-astropy: Skip one more test.

* gnu/packages/astronomy.scm (python-astropy)[arguments] <test-flags>:
Skip one more test.

Change-Id: I45a6e22463883759f9113ce286f8264b53e37d60

gnu: python-s3fs: Update to 2025.7.0.

* gnu/packages/python-web.scm (python-s3fs): Update to 2025.7.0.
[native-inputs]: Remove python-flask, python-flask-cors, python-moto, python-pytest,
python-pytest-asyncio, and python-wheel.

Change-Id: I8c7c74a952fb71259e8b20b8ef4153d4a276214c

gnu: poetry: Update to 2.1.3.

* gnu/packages/python-xyz.scm (poetry): Update to 2.1.3.
[arguments] <test-flags>: Ignore a few more test files.
[propagated-inputs]: Add python-findpython and python-pbs-installer.

Change-Id: I9c4b33ad7a9e7ea6a93358ecc5fde592581bec9d

gnu: Add python-findpython.

* gnu/packages/python-xyz.scm (python-findpython): New variable.

Change-Id: Ibec3d6e2307508e7cf6ed2f73db7e003e4f719e0

gnu: Add python-pbs-installer.

* gnu/packages/python-xyz.scm (python-pbs-installer): New variable.

Change-Id: I38940d7f1a86c2afdf83c590a2b42624e31c88c1

gnu: python-moto: Update to 5.1.5.

* gnu/packages/python-xyz.scm (python-moto): Update to 5.1.5.
[arguments] <test-args>: Run tests in parallel. Skip 10 more tests.
[propagated-inputs]: Add python-pyparsing.
[native-inputs]: Add python-pytest-xdist.

Change-Id: I5054e141f870640f898a0722389e95f42d5a951d

gnu: python-gseapy: Fix build.

* gnu/packages/bioinformatics.scm (python-gseapy)[native-inputs]:
Remove python-wheel; add python-setuptools.

Change-Id: I2ff133cb081d06a6fbda88e50745bb9fc25ede0c