gnu: icedtea: Update to 3.6.0 [security fixes].
Fixes CVE-2017-{10274,10821,10825,10295,10388,10346,10350,10347,10349,10345,
10348,10357,10355,10356,10165} and CVE-2016-{10165,9840,9841,9842,9843}.
* gnu/packages/java.scm (icedtea-8): Update to 3.6.0.
[native-inputs]: Update dependency hashes.
gnu: diamond: Update to 0.9.12.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.12.
gnu: sssd: Disable failing test.
* gnu/packages/sssd.scm (sssd)[arguments]<#:phases>: Add substitution to
'disable-failing-test' phase.
gnu: samba: Update to 4.7.1.
* gnu/packages/samba.scm (samba): Update to 4.7.1.
gnu: ldb: Update to 1.3.0.
* gnu/packages/samba.scm (ldb): Update to 1.3.0.
gnu: re2: Update to 2017-11-01.
* gnu/packages/regex.scm (re2): Update to 2017-11-01.
gnu: libxfont@1: Update to 1.5.3.
* gnu/packages/xorg.scm (libxfont): Update to 1.5.3.
[source](patches): Remove.
gnu: multiqc: Update to 1.3.
* gnu/packages/bioinformatics.scm (multiqc): Update to 1.3.
[propagated-inputs]: Add python-enum34.
[license]: The license was changed to "GPLv3 or later" with this release.
gnu: iso-codes: Update to 3.76.
* gnu/packages/iso-codes.scm (iso-codes): Update to 3.76.
gnu: r-ape: Update to 5.0.
* gnu/packages/bioinformatics.scm (r-ape): Update to 5.0.
[propagated-inputs]: Add r-rcpp.
gnu: r-bbmle: Update to 1.0.20.
* gnu/packages/cran.scm (r-bbmle): Update to 1.0.20.
gnu: r-proxy: Update to 0.4-19.
* gnu/packages/cran.scm (r-proxy): Update to 0.4-19.
gnu: r-glue: Update to 1.2.0.
* gnu/packages/cran.scm (r-glue): Update to 1.2.0.
gnu: r-withr: Update to 2.1.0.
* gnu/packages/statistics.scm (r-withr): Update to 2.1.0.
[propagated-inputs]: Add r-lattice.
gnu: r-quantreg: Update to 5.34.
* gnu/packages/statistics.scm (r-quantreg): Update to 5.34.
gnu: r-robustbase: Update to 0.92-8.
* gnu/packages/statistics.scm (r-robustbase): Update to 0.92-8.
gnu: r-purrr: Update to 0.2.4.
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.4.
gnu: r-irlba: Update to 2.3.1.
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.1.
gnu: r-checkmate: Update to 1.8.5.
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.5.
gnu: r-multitaper: Update to 1.0-14.
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-14.