gnu: python-werkzeug: Update to 3.1.3.

* gnu/packages/python-web.scm (python-werkzeug): Update to 3.1.3.
[build-system]: Swap to pyproject-build-system.
[arguments]<phases>: Use default 'check phase.
[propagated-inputs]: Add python-markupsafe.
[native-inputs]: Add python-flit-core, python-watchdog, and
python-ephemeral-port-reserve.

Change-Id: I97a971034993272b369803eb24f7c6f718da55af

gnu: Add python-ephemeral-port-reserve.

* gnu/packages/python-web.scm (python-ephemeral-port-reserve): New variable.

Change-Id: I198370d0d3b6ddaf3cc94a98a2cbebb654072e53

gnu: python-watchdog: Update to 6.0.0.

* gnu/packages/python-xyz.scm (python-watchdog): Update to 6.0.0.
[arguments]<test-flags>: Disable one more test.

Change-Id: I06b31b3d659739d5b5e9a6573597da3b57ea3919

gnu: python-versioneer: Simplify tests.

* gnu/packages/python-xyz.scm (python-versioneer): Reduce amount of
dependencies for not stable tests.
[arguments]<test-flags>: Disable expensive tests which require
virtual environment setup.
<phases>: Use default 'check phase.
[native-inputs]: Remove git-minimal, python-flake8, python-pycodestyle,
python-pyflakes, and python-pypa-build; add git-minimal/pinned and
python-pytest.

Change-Id: Ida1c7ac401a1bb9a80136b88099019389a5c51cc

gnu: python-isort: Update to 5.13.2.

* gnu/packages/python-xyz.scm (python-isort): Update to 5.13.2.
[arguments]<test-flags>: Disable one failing test.
[native-inputs]: Sort alphabetically.

Change-Id: I23975366b6bb5cc9caa6bf8d41ca9fc8597edabd

gnu: python-numpy: Update to 1.24.4.

* gnu/packages/python-xyz.scm (python-numpy): Update to 1.24.4.
[native-inputs]: Add meson-python, pkg-config, python-mypy, python-setuptools, and
python-wheel.

Change-Id: Icb2dfc04411d2eb87be25c336239c6f178fa5be2

gnu: python-pytest-mypy: Update to 0.10.3.

* gnu/packages/check.scm (python-pytest-mypy): Update to 0.10.3.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Ic0483fe3c430c00ea82e9f54e60632ce48f79e75

gnu: python-mypy: Update to 1.13.0.

* gnu/packages/python-check.scm (python-mypy): Update to 1.13.0.
[native-inputs]: Add nss-certs-for-test, python-hatchling,
python-setuptools, and python-wheel.
(python-mypy-minimal)[arguments]<phases>: Keep all phases.
[native-inputs]: Add python-setuptools, and python-wheel.

Change-Id: I45c35e361430a65a649f90e6aab7c2cff7218164

gnu: python-jsonschema: Update to 4.23.0.

* gnu/packages/python-xyz.scm (python-jsonschema): Update to 4.23.0.
[arguments]<phases>: Remove 'patch-pyproject phase.
[native-inputs]: Add python-pip.

Change-Id: I20b7b72ee66982c23a134caabe267cdccbdd5196

gnu: python-attrs: Update to 24.2.0.

* gnu/packages/python-xyz.scm (python-attrs): Update to 24.2.0.

Change-Id: I7482ff7f2b1654f2b89c6a285ee40d84d2a90f89

gnu: meson-python: Update to 0.17.1.

* gnu/packages/build-tools.scm (meson-python): Update to 0.17.1.
[propagated-inputs]: Remove python-cython; add python-cython-3.
[native-inputs]: Remove python-cython; add python-cython-3.

Change-Id: Ifd8151f99137a7825321a9e8834c33aff2eebc87

gnu: python-cython-3: Update to 3.0.11.

Port test flags and check phase from python-cython to ease the process
of exclusion failing tests.

* gnu/packages/python-xyz.scm (python-cython-3): Update to 3.0.11.
[surce]: Adjust URI name as it changed in PyPI.
[build-system]: Swap to pyproject-build-system.
[native-inputs]: Add python-setuptools, and python-wheel.

Change-Id: I72b23a0e710a90fc78f93633319fb07edd0a8b20

gnu: python-hatchling: Update to 1.26.1.

* gnu/packages/python-build.scm (python-hatchling): Update to 1.26.1.

Change-Id: I6fccff39fdb10f209017e8d9709b8c39baefb914

gnu: python-editables: Update to 0.5.

* gnu/packages/python-build.scm (python-editables): Update to 0.5.
[build-system]: Swap to pyproject-build-system.
[arguments]<tests>: Disable to avoid any cycles with python-pytest.
[native-inputs]: Add python-flit-core.

Change-Id: I2f7d6d70541f372753dc168e74e2c8e8787c946e

gnu: python-packaging-bootstrap: Update to 24.2.

* gnu/packages/python-build.scm (python-packaging-bootstrap): Update to 24.2.

Change-Id: I70741fd0fd7d61afbe3a10ebc1e59ffa0643383e

gnu: python-trove-classifiers: Update to 2024.10.21.16.

* gnu/packages/python-build.scm (python-trove-classifiers): Update to 2024.10.21.16.

Change-Id: If6ec7ef0d02d516a9ba2b16f4afe879ae2b924d5

gnu: python-tomli: Update to 2.1.0.

* gnu/packages/python-build.scm (python-tomli): Update to 2.1.0.

Change-Id: I88b93611aa41e8daab2155af99b35e910e967de9

gnu: python-flaky: Update to 3.8.1.

* gnu/packages/check.scm (python-flaky): Update to 3.8.1. Enable most of
the tests.
[build-system]: Swap to pyproject-build-system.
[arguments]<test-flags>: Silent some failing tests.
[native-inputs]: Add python-pytest, python-setuptools, and python-wheel.

Change-Id: I649ff32ad27ffcca288e2929388a5b787f31072f

gnu: python-execnet: Update to 2.1.1.

* gnu/packages/python-xyz.scm (python-execnet): Update to 2.1.1.
[native-inputs]: Remove python-py, python-pytest, python-pytest-timeout, and
python-setuptools-scm; add python-pytest-bootstrap.

Change-Id: I370f5080d2c4b8017672937e25f8d77de01427d2

gnu: python-py: Improve package style.

* gnu/packages/python-xyz.scm (python-py): Add maintenance note.
[build-system]: Swap to pyproject-build-system.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I8e14c2607d186e689461882fe4ac1b7f4c7ce84c