gnu: python-quadpy: Deselect one failing test.

* gnu/packages/maths.scm (python-quadpy) [arguments] <test-flags>:
Deselect one failing test.

Change-Id: I29ab3db45afb70928125773644b8704f9b731ada

gnu: python-orthopy: Skip some tests, fix build.

* gnu/packages/maths.scm (python-orthopy) [arguments] <test-flags>: Skip
5 failing tests.

Change-Id: Ic5e55d9a8a054eaba9f685e134a366dbfaa9bd8d

gnu: python-peaks2utr: Update to 1.4.1 and fix build.

* gnu/packages/bioinformatics.scm (python-peaks2utr): Update to 1.4.1.
[arguments] <test-flags>: Skip 2 more similar failing test.
<phases>: Add 'relax-requirements.

Change-Id: Ia26903116915c4ef031b4a6bdb5dae64d109a1f4

gnu: python-gffutils: Update to 0.13 and fix build.

* gnu/packages/bioinformatics.scm (python-gffutils): Update to 0.13.
[build-system]: Swap to pypproject-build-system.
[arguments] <phases>: Use default 'check, add 'set-HOME.
[propagated-inputs]: Remove python-six.
[native-inputs]: Remove python-nose; add python-pytest,
python-setuptools, and python-wheel.

Change-Id: I77b1ed5be8750bdd2f2cdff3135430207b80f6fc

gnu: python-parabam: Add a maintenance note.

* gnu/packages/bioinformatics.scm (python-parabam): Add a maintenance
note on package build issue, reported upstream.

Change-Id: I447fa2354a2318b19d0eca5acf844a574e49db09

gnu: python-astroml: Disable more tests.

* gnu/packages/astronomy.scm (python-astroml) [arguments] <test-flags>:
Disable tests requiring NumPy, reported upstream.

Change-Id: I30693e2f3550ba8aab012b54d3d838508038c762

gnu: python-pyopenssl: Skip TestDTLS::test_timeout.

With the changes currently on the python-team branch, this seems to fail at
least on aarch64-linux, presumably due to faketime being used.

* gnu/packages/python-crypto.scm (python-pyopenssl)[arguments]: Skip
TestDTLS::test_timeout.

Change-Id: Ifca6dc323141219a01b9aff7baad8c712ac56b02

gnu: python-autograd: Fix indentation.

* gnu/packages/machine-learning.scm (python-autograd): Fix indentation.

Change-Id: I67b1c01d323e2458b49447969bb4164f71d1571b

gnu: python-autograd: Update to 1.7.0.

* gnu/packages/machine-learning.scm (python-autograd): Update to 1.7.0.
[source]: Use the latest version tag.
[native-inputs]: Remove python-nose, python-setuptools, and
python-wheel; add python-hatchling.

Change-Id: I42cd6b9ce621c1509f459fb947b09d05635fb79b

gnu: python-aiosmtpd: Update to 1.4.6.

* gnu/packages/mail.scm (python-aiosmtpd): Update to 1.4.6.
[build-system]: Switch to pyproject.
[arguments]{phases}: Delete it.
{test-flags}: Switch a QA test.
[native-inputs]: Remove python-flufl-testing, python-node.  Add
python-pytest, python-pytest-asyncio, python-pytest-cov,
python-pytest-mock, python-setuptools, python-wheel.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-netaddr: Update to 1.3.0.

* gnu/packages/python-web.scm (python-netaddr): Update to 1.3.0.
[build-system]: Switch to pyproject.
[native-inputs]: Add python-poetry-core, python-pytest,
python-setuptools, python-wheel.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-netaddr: Move to (gnu packages python-web).

* gnu/packages/python-xyz.scm (python-netaddr): Move from here…
* gnu/packages/python-web.scm (python-netaddr): …to here.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Standardize python-oslo.* package names.

* gnu/packages/openstack.scm (python-oslo.concurrency,
python-oslo.config, python-oslo.context, python-oslo.i18n,
python-oslo.log, python-oslo.serialization, python-oslo.utils): Rename
packages.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-debtcollector: Update to 3.0.0.

* gnu/packages/openstack.scm (python-debtcollector): Update to 3.0.0.
[source]: Patch {origin} to remove unwanted native-inputs.
[build-system]: Switch to pyproject-build-system.
[propagated-inputs]: Remove python-six.
[native-inputs]: Add python-doc8, python-fixtures,
python-openstackdocstheme, python-reno, python-setuptools,
python-stestr and python-wheel. Remove python-subunit and
python-testrepository.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: pwntools: Update to 4.4.0.

* gnu/packages/cybersecurity.scm (pwntools): Update to 4.4.0.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Add python-unix-ar.

* gnu/packages/python-compression.scm (python-unix-ar): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Add python-colored-traceback.

* gnu/packages/python-xyz.scm (python-colored-traceback): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-pegasusio: Update to 0.9.1.

* gnu/packages/bioinformatics.scm (python-pegasusio): Update to 0.9.1.
[propagated-inputs]: Add python-cython, python-setuptools. Remove
python-importlib-metadata.
[native-inputs]: Styling from guix style.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-nptyping: Ignore failing test.

* gnu/packages/python-check.scm (python-nptyping)[arguments]
{test-flags}: Ignore failing test.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-ncls: Update to 0.0.68.

* gnu/packages/python-xyz.scm (python-ncls): Update to 0.0.68.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-cython, python-pandas, python-pytest,
python-setuptools, python-wheel.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>