gnu: Add python-comm.

* gnu/packages/jupyter.scm (python-comm): New variable.

Change-Id: I888125238a566b470d4f5f96c5cc178f41a7a4ff

gnu: python-widgetsnbextension: Update to 4.0.10.

* gnu/packages/python-xyz.scm (python-widgetsnbextension): Update to 4.0.10.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-jupyter-packaging, python-setuptools, and
python-wheel.
[propagated-inputs]: Remove python-notebook.

Change-Id: I63519916b234a45b352d0ea850566a1de42315c7

gnu: python-nbconvert: Update to 7.16.4.

* gnu/packages/python-xyz.scm (python-nbconvert): Update to 7.16.4.
[arguments]: Adjust test flags.
[native-inputs]: Add python-flaky and python-hatchling; remove
python-setuptools and python-wheel.
[propagated-inputs]: Remove python-entrypoints and python-testpath; add
python-importlib-metadata, python-markupsafe, python-packaging,
python-tinycss2, and texlive-soul.

Change-Id: I03ae560aaabd6b31bb1e5794efc4636315be3989

gnu: python-mistune: Update to 3.0.2.

* gnu/packages/python-xyz.scm (python-mistune): Update to 3.0.2.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Ia04fb0e249fe97ba2e4bf8123aeb340a8ec70953

gnu: python-pycurl: Update to 7.45.3.

* gnu/packages/python-web.scm (python-pycurl): Update to 7.45.3.
[arguments]: Adjust tests.

Change-Id: I05120931c979d292c2f888d29c80c93a82a291a0

gnu: python-pyls-black: Add missing input.

* gnu/packages/python-xyz.scm (python-pyls-black)[propagated-inputs]: Add
python-toml.

Change-Id: Ic6be8927af881916faa715bb4974007bcaf8d379

gnu: python-sphinx-4: Inherit from python-sphinx-5.

* gnu/packages/sphinx.scm (python-sphinx-4): Inherit from python-sphinx-5, in
particular the arguments field.

Change-Id: Icb15e34b7bfbe38d17f4cd64234316950437538d

gnu: python-sphinx-5: Disable failing tests.

* gnu/packages/sphinx.scm (python-sphinx-5)[arguments]: Disable three tests
that fail for silly reasons.

Change-Id: I82d9fd4465fbfe052f8aad2264a9b04d34efef89

gnu: python-nbclient: Update to 0.10.0.

* gnu/packages/jupyter.scm (python-nbclient): Update to 0.10.0.
[native-inputs]: Remove python-setuptools and python-wheel; add
python-hatchling, python-flaky, python-pytest, python-pytest-asyncio,
python-pytest-cov, python-testpath, and python-xmltodict.

Change-Id: I15a87323456c6b4eaa8361972bcb6ae3686ec687

gnu: python-lsp-server: Update to 1.11.0.

* gnu/packages/python-xyz.scm (python-lsp-server): Update to 1.11.0.
[build-system]: Use pyproject-build-system.
[arguments]: Replace custom 'check phase with #:test-flags.
[propagated-inputs]: Remove python-autopep8, python-flake8, python-future, and
python-rope; add python-docstring-to-markdown, python-importlib-metadata, and
python-whatthepatch.
[native-inputs]: Add python-autopep8, python-flake8, python-rope,
python-setuptools, and python-wheel; remove python-mock and python-versioneer.

Change-Id: I64e5b3f9f9a92f720d006634fe24ca094c96ea60

gnu: python-lsp-jsonrpc: Update to 1.1.2.

* gnu/packages/python-xyz.scm (python-lsp-jsonrpc): Update to 1.1.2.
[build-system]: Use pyproject-build-system.
[native-inputs]: Remove python-mock; add python-coverage, python-pycodestyle,
python-pyflakes, python-pylint, python-pytest-cov, python-setuptools,
python-setuptools-scm, and python-wheel.

Change-Id: Ia8fb2c469d96727addfcf88a36fc51f0e6c0efac

gnu: python-rope: Update to 1.13.0.

* gnu/packages/python-xyz.scm (python-rope): Update to 1.13.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove to enable all tests.
[propagated-inputs]: Add python-pytoolconfig.
[native-inputs]: Add python-pre-commit, python-pytest-cov, python-setuptools,
and python-wheel.

Change-Id: I6a114d63cc6a59e292801095bef200cff60eeeff

gnu: python-platformdirs: Update to 4.2.1.

* gnu/packages/python-xyz.scm (python-platformdirs): Update to 4.2.1.
[native-inputs]: Add python-covdefaults and python-pytest-cov.

Change-Id: I8cd3e6cbe7a43f7a32566d263e571c0ea9920e17

gnu: Add python-whatthepatch.

* gnu/packages/python-xyz.scm (python-whatthepatch): New variable.

Change-Id: If087238003594c55f52d4467b6e7b494a52348f8

gnu: Add python-pytoolconfig.

* gnu/packages/python-xyz.scm (python-pytoolconfig): New variable.

Change-Id: I203d68b0eba0b38020a1be98904be386dfc3b2ed

gnu: repo2docker: Update to 2024.03.0.

* gnu/packages/jupyter.scm (repo2docker): Update to 2024.03.0.
[build-system]: Use pyproject-build-system.
[arguments]: Use G-expression.
[native-inputs]: Add python-setuptools, python-sphinx-autobuild,
python-sphinx-copybutton, python-sphinxext-opengraph,
python-sphinxext-rediraffe, and python-wheel.

Change-Id: I5761f6d36e57b7fe25bc1dbbdaedfa2ca69c1fa7

gnu: Add python-sphinxext-rediraffe.

* gnu/packages/sphinx.scm (python-sphinxext-rediraffe): New variable.

Change-Id: I772993b7bc3a43befc459cc6a9c6d1c90932d341

gnu: python-myst-parser: Update to 3.0.1.

* gnu/packages/sphinx.scm (python-myst-parser): Update to 3.0.1.
[arguments]: Adjust tests; remove extra build phases.

Change-Id: I1990d2156958dc437875bf1f7f8b4defc147e58a

gnu: python-sphinx-pytest: Update to 0.2.0.

* gnu/packages/sphinx.scm (python-sphinx-pytest): Update to 0.2.0.

Change-Id: I37b3da737bd09b6b2ffa59b6e37559ac04b0e1f7

gnu: python-jupyterlab-server: Update to 2.27.1.

* gnu/packages/jupyter.scm (python-jupyterlab-server): Update to 2.27.1.
[build-system]: Use pyproject-build-system.
[arguments]: Replace custom 'check phase with #:test-flags; add phases
'ignore-deprecation-warnings and 'set-HOME.
[propagated-inputs]: Remove python-entrypoints.
[native-inputs]: Remove python-jupyter-server and python-pytest-tornasync; add
python-hatchling, python-pytest-cov, python-pytest-jupyter,
python-pytest-timeout, python-requests-mock, and python-werkzeug.

Change-Id: If0a0631717a6dc6a260d6954349576b0f4efda3d