gnu: python-ccdproc: Update to 2.4.3.

* gnu/packages/astronomy.scm (python-ccdproc): Update to 2.4.3.
[native-inputs]: Add python-hatch-vcs and python-hatchling.

Change-Id: I28517fd7e02dbfce0655a528b6aa90ad0ef82500

gnu: python-astroquery: Update to 0.4.8.

* gnu/packages/astronomy.scm (python-astroquery): Update to 0.4.8.

Change-Id: I460b98ebf5a3ccc025fa9138ff72e33224a09a14

gnu: python-astropy-iers-data: Update to 0.2025.1.20.0.32.27.

* gnu/packages/astronomy.scm (python-astropy-iers-data): Update to 0.2025.1.20.0.32.27.
[native-inptus]: Remove python-hypothesis.

Change-Id: I75bd9bfd5199741c3df98240439ef2d5302e6510

gnu: python-asdf-compression: Update to 0.0.1-1.7cfd07c.

* gnu/packages/astronomy.scm (python-asdf-compression): Update to
0.0.1-1.7cfd07c.

Change-Id: I93c820df700dfd9360f40d90b86a81a8a21327f8

gnu: python-ads: Update to 0.12.7.

* gnu/packages/astronomy.scm (python-ads): Update to 0.12.7.

Change-Id: I54bda0030109e2d3c36eb6620f8cf50e19e1a4f0

gnu: stellarium: Update to 24.4-0.60b6bec.

* gnu/packages/astronomy.scm (stellarium): Update to 24.4-0.60b6bec.
[source]: Use the latest commit containing the build fix.
[inputs]: Remove indi, add indi-2.0.

Change-Id: Ic35bb032bd56d1a00e7de5d6de57946e25325a69

gnu: sextractor: Update to 2.28.2.

* gnu/packages/astronomy.scm (sextractor): Update to 2.28.2.

Change-Id: I1af48d5656e8f5a8425f6e8928a86742f2620a74

gnu: calceph: Update to 4.0.4.

* gnu/packages/astronomy.scm (calceph): Update to 4.0.4.

Change-Id: Idffb093376dc4c5d9bc9b3691dccafeb9ffa7e46

gnu: python-numba: Update to 0.61.0.

* gnu/packages/python-xyz.scm (python-numba): Update to 0.61.0.
[arguments]: Simplify 'check phase.

Change-Id: I161f58af7b64ba550c14d5d2dea3d5dccfc07c53

gnu: python-llvmlite: Update to 0.44.0.

* gnu/packages/llvm.scm (python-llvmlite): Update to 0.44.0.
[arguments]: Use G-expression.
[inputs]: Update to latest upstream patches for LLVM; use llvm-15.

Change-Id: I294d67f368b9c0b1196514fadc3cecf5dd51fe3e

gnu: mandoc: Support zstd-compressed man pages.

Since #68242 Guix uses zstd compression for man pages.  Unfortunately,
upstream mandoc only supports gzip compressed man pages.  Luckily, zstd
provides a wrapper library which easily allows adapting software using
zlib to zstd compression.  This patch uses this wrapper library in
conjunction with mandoc to add support for zstd compression to it,
thereby allowing Guix man pages to be viewed with mandoc again.

Without this patch, mandoc is essentially defunct on Guix.

* gnu/packages/man.scm (mandoc): Support zstd compression.
* gnu/local.mk: Add new patch.
* gnu/packages/patches/mandoc-support-zstd-compression.patch: New file.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Change-Id: I49a6b9f81309aa1b9f0e5d19b1813dbac13cf968

gnu: libtorrent-rasterbar: Remove special case for test_ssl.

With the release of 2.0.11, the SSL certificates used for tests are valid for
long enough time (~end of year 2297) to no longer require faketime.  With the
removal of faketime, the explicit timeout is also no longer required, since it
does not hang anymore.

This gives us back the validation that SSL works.

* gnu/packages/bittorrent.scm
(libtorrent-rasterbar)[arguments]<#:phases>['check]: Remove test timeout.  Do
not special case test_ssl.

Change-Id: I535c72fec24658a4b2151d2e8794319055c9a278
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>

gnu: libtorrent-rasterbar: Update to 2.0.11.

* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 2.0.11.

Change-Id: Ib6fb2676f6b6773690473e63276574abaebcac0a
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>

gnu: llama-cpp: Enable Vulkan.

* gnu/packages/patches/llama-cpp-vulkan-optional.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/machine-learning.scm (llama-cpp)
[source]: Add patch.
[arguments]<#:tests?>: Disable.
<#:configure-flags>: Add "-DGGML_VULKAN=ON".
<#:phases>[patch-paths]: New phase.
[inputs]: Add vulkan-headers, vulkan-loader.
[native-inputs]: Add shaderc, bash.

Change-Id: Ib7a58f5c7f622213f3aaf5abcd701b17eed80f6b

gnu: python-scanpy: Disable one more test.

* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Disable one
failing test.

Change-Id: If262b33a3e2c6789c0ce4b8a91f26a8a48054632

gnu: cutecom: Fix the license.

* gnu/packages/engineering.scm (cutecom) [license]: Set to gpl3+.

Change-Id: Ifc2c1581b8adad42d5452728ca66c53efc901139

gnu: python-unyt: Update to 3.0.3, fix build.

* gnu/packages/python-science.scm (python-unyt): Update to 3.0.3. Fix
build.

Change-Id: Ic894ddfa982b9d41b40fc7e18149de099dd705f6

gnu: packages/golang-xyz: Simplify some difinitions.

This changes utilize default go-build-system options to skip build and
test the whole project recursively.

* gnu/packages/golang-xyz.scm (go-github-com-syndtr-goleveldb,
go-github-com-jdkato-twine) [arguments]: <test-flags>: Move skip test
logic here.
<skip-build?>: No go files in project's root.
<phases>: Use default 'check, preserve 'build.

* gnu/packages/golang-xyz.scm: (go-github-com-muesli-reflow,
go-github-com-matttproud-golang-protobuf-extensions-v2,
go-github-com-liyue201-gostl, go-github-com-lithammer-fuzzysearch,
go-github-com-google-gnostic-models,
go-github-com-burntsushi-graphics-go)
[arguments]: <skip-build?>: No go files in project's root.
<phases>: Preserve 'build.

Change-Id: I02840169f6f572c947a725f0a03491f0769fd807

gnu: go-github-com-opencontainers-runtime-spec: Enable tests.

* gnu/packages/golang-xyz.scm (go-github-com-opencontainers-runtime-spec)
[arguments] <skip-tests?>: No go files in project's root.
<phases>: Preserve 'build and 'check.
[native-inputs]: Add go-github-com-xeipuuv-gojsonschema.

Change-Id: Ic170a7de808577ae7c783f8fc29cf9e7d92c37b6

gnu: Add cutecom.

* gnu/packages/engineering.scm (cutecom): New variable.

Change-Id: Ib560ba855074514e9e2df1884b49722218b1a410