~ruther/guix-local

1d0263b4 — Ricardo Wurmus 8 years ago 
gnu: r-rhtslib: Update to 1.10.0.

* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.10.0.
c25154e5 — Ricardo Wurmus 8 years ago 
gnu: r-rbgl: Update to 1.54.0.

* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.54.0.
727706ad — Ricardo Wurmus 8 years ago 
gnu: r-annotationforge: Update to 1.20.0.

* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.20.0.
3fd010ff — Ricardo Wurmus 8 years ago 
gnu: r-dexseq: Update to 1.24.0.

* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.0.
0166dc07 — Ricardo Wurmus 8 years ago 
gnu: r-deseq2: Update to 1.18.0.

* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.0.
554fac74 — Ricardo Wurmus 8 years ago 
gnu: r-genefilter: Update to 1.60.0.

* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.60.0.
cb4d3ff2 — Ricardo Wurmus 8 years ago 
gnu: r-geneplotter: Update to 1.56.0.

* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.56.0.
2d4e887d — Ricardo Wurmus 8 years ago 
gnu: r-annotate: Update to 1.56.0.

* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.0.
94fd86e5 — Ricardo Wurmus 8 years ago 
gnu: r-dnacopy: Update to 1.52.0.

* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.52.0.
c7782c3f — Ricardo Wurmus 8 years ago 
gnu: r-biocviews: Update to 1.46.0.

* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.46.0.
[propagated-inputs]: Remove r-knitr.
7373b416 — Ricardo Wurmus 8 years ago 
gnu: r-bioccheck: Update to 1.14.0.

* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.14.0.
[native-inputs]: Remove which.
[propagated-inputs]: Add r-stringdist.
a40a04fd — Ricardo Wurmus 8 years ago 
gnu: Add r-stringdist.

* gnu/packages/cran.scm (r-stringdist): New variable.
8ca2b2b0 — Ricardo Wurmus 8 years ago 
gnu: r-rgraphviz: Update to 2.22.0.

* gnu/packages/graph.scm (r-rgraphviz): Update to 2.22.0.
25e51b1c — Ricardo Wurmus 8 years ago 
guix: Add archive support for bioconductor-uri.

* guix/build-system/r.scm (bioconductor-uri): Also return the archive URL.
* guix/import/cran.scm (latest-bioconductor-release, fetch-description):
Adjust because bioconductor-uri now returns a list.
27baf509 — Ricardo Wurmus 8 years ago 
import: cran: Use Bioconductor 3.6 helpers.

* guix/import/cran.scm (bioconductor-mirror-url): Remove procedure.
(fetch-description): Extract DESCRIPTION file from tarball for Bioconductor
packages.
(latest-bioconductor-release): Use latest-bioconductor-package-version.
84dfdc57 — Ricardo Wurmus 8 years ago 
import: cran: Add support for Bioconductor 3.6.

* guix/import/cran.scm (%bioconductor-version,
%bioconductor-packages-list-url): New variables.
(bioconductor-packages-list, latest-bioconductor-package-version): New
procedures.
6b46b04f — Ricardo Wurmus 8 years ago 
import: utils: Add string helpers.

* guix/import/utils.scm (read-lines, chunk-lines): New procedures.
89618fa8 — Eric Bavier 8 years ago 
build: Conditionally build json importer.

* Makefile.am (MODULES): Add guix/scripts/import/json.scm when HAVE_GUILE_JSON.
a0e4b41b — Ludovic Courtès 8 years ago 
gnu: guile-git: Update snapshot.

* gnu/packages/guile.scm (guile-git): Update to commit 951a32c.
fedde43b — Brendan Tildesley 8 years ago 
gnu: moka-icon-theme: Fix license.

* gnu/packages/gnome.scm (moka-icon-theme): Add cc-by-sa4.0 to license field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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