etc: Add bioinformatics team.

* etc/teams.scm (bioinformatics): New team.

Change-Id: Ic5d95df8a28e0bb575ef58a0e269b6e82e23cb6a

gnu: python-abjad-ext-rmakers: Replace deprecated input.

* gnu/packages/music.scm (python-abjad-ext-rmakers)[propagated-inputs]:
Remove abjad; add python-abjad.

Change-Id: Id313a44afdfad3643ed9082c97bb3b55041ebec3

gnu: python-abjad-ext-nauert: Replace deprecated input.

* gnu/packages/music.scm (python-abjad-ext-nauert)[propagated-inputs]:
Remove abjad; add python-abjad.

Change-Id: I74b52d2a17126c88e3e8635b4b6a3ff67738d31e

gnu: cgit: Update to 1.2.3-11.76abc40.

* gnu/packages/version-control.scm (cgit): Update to 1.2.3-11.76abc40.
[inputs]: Update git to 2.52.0.

Change-Id: I7bbcaed37288165ba2100fb62487f052a40a5a8b
Signed-off-by: Andreas Enge <andreas@enge.fr>

gnu: buildah: Update to 1.42.1.

* gnu/packages/containers.scm (buildah): Update to 1.42.1.
[native-inputs]: Replace go-1.23 by go-1.24.

Change-Id: Iedd79d9b2ad05cc0a8a40a314133b292e0c27233

gnu: undbx: Ignore warnings.

* gnu/packages/mail.scm (undbx)[arguments]: Add phase 'disable-Werror.

Change-Id: I2f99bea1de5bb4aea502ffd9b6150f16a8ab46e1

gnu: dsp: Update to 2.0.

* gnu/packages/audio.scm (dsp): Update to 2.0.

Change-Id: Iac512686d2dda1ed9cbcaec042af4c6d021953ad

gnu: pigx-rnaseq: Add missing input.

* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Add r-genomeinfodb.

Change-Id: I358d6dca2acde401eaf6cdd370109cd9aa0b558d

gnu: primesieve: Update to 12.10

* gnu/packages/maths.scm(primesieve): Update to 12.10.

Change-Id: I1ba241afbba68d974570694d044ec3e14f58a425
Signed-off-by: Andreas Enge <andreas@enge.fr>

gnu: primecount: Update to 7.20.

* gnu/packages/maths.scm(primecount): Update to 7.20.

Change-Id: I018f5e61cb7a6f2ad27d03124208ac5950bc5ead
Signed-off-by: Andreas Enge <andreas@enge.fr>

gnu: primesieve: Reformat.

* gnu/packages/maths.scm (primesieve): Reformat.
[source, arguments]: Indent.
[description]: Fill column limit.
[home-page]: Put right before license.

Change-Id: I9a94d6dc043ff934d29800d05c48ea7a5e137f54
Signed-off-by: Andreas Enge <andreas@enge.fr>

gnu: primecount: Reformat.

* gnu/packages/maths.scm(primecount): Reformat.
[source, arguments]: Indent.
[description]: Fill column limit.
[home-page]: Put right before license.

Change-Id: I7630dc994166664bf96a7da262062c2b292f0073
Signed-off-by: Andreas Enge <andreas@enge.fr>

gnu: crun: Update to 1.25.1.

* gnu/packages/containers.scm (crun): Update to 1.25.1.

Signed-off-by: Andreas Enge <andreas@enge.fr>

gnu: ikiwiki: Replace deprecated input.

* gnu/packages/web.scm (ikiwiki)[native-inputs]: Remove bazaar; add breezy.

Change-Id: Iebaaea0088bbfe60b101774fde6204e3effb1256

gnu: mcy: Update to 0.60.

* gnu/packages/electronics.scm (mcy): Update to 0.60.

Change-Id: I6499b4381b064967aada2f3f880c9c00859a5e61

gnu: eqy: Update to 0.60.

* gnu/packages/electronics.scm (eqy): Update to 0.60.

Change-Id: I5830309c613becbf92051bdcaa3ba36a40e0dc83

gnu: sby: Update to 0.60.

* gnu/packages/electronics.scm (sby): Update to 0.60.

Change-Id: I14633f778eaed74fc6af059ac1d37cdb5c6c88ef

gnu: yosys: Update to 0.60.

* gnu/packages/electronics.scm (yosys): Update to 0.60.
[inputs]: Add editline.
[native-inputs]: Remove python and tcl.
[arguments]: Enable libyosys in ’configure-makefile #:phase.
[synopsys]: Update.
[description]: Update.

Change-Id: I295961abf7d4bfa9dc9ce1b2e8bd68b0950e96f0

gnu: abc-yosyshq: Update to 0.60.

* gnu/packages/electronics.scm (abc-yosyshq): Update to 0.60.

Change-Id: I496352f70b03fe39618e64e02b3ecc98f3dcd0df

gnu: perl-sdl: Fix build with gcc@14.

* gnu/packages/perl.scm (perl-sdl)[arguments]<#:phases>{gcc-14}:
New phase to set CFLAGS.

Fixes: guix/guix#4630
Change-Id: I8bc422b6867e0c49586797b57ef49df2881fcbba
Signed-off-by: Andreas Enge <andreas@enge.fr>